A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.8
nTPM
Monaco:
24.6
nTPM
Schmiedel:
25.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.8
HPA sample
nTPM
NK-cell nTPM: 2.8
Samples: 6
Max nTPM: 4.7
Min nTPM: 0.0
P10809_1013
3.4
P10809_1033
3.1
P10809_1052
4.7
P10809_1071
4.2
P10809_1093
0.0
P10809_1103
1.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.6
Monaco sample
nTPM
NK-cell nTPM: 24.6
Samples: 4
Max nTPM: 33.9
Min nTPM: 13.5
RHH5316_R3683
13.5
RHH5224_R3596
25.1
RHH5253_R3625
33.9
RHH5282_R3654
26.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.4
Schmiedel sample id
TPM
NK-cell TPM: 25.4
Samples: 90
Max TPM: 40.6
Min TPM: 12.5
NK_1
40.6
NK_2
40.5
NK_3
39.8
NK_4
38.0
NK_5
37.0
NK_6
36.5
NK_7
35.2
NK_8
33.1
NK_9
33.0
NK_10
32.9
NK_11
31.9
NK_12
31.7
NK_13
31.3
NK_14
31.2
NK_15
30.9
NK_16
30.9
NK_17
30.4
NK_18
29.9
NK_19
29.9
NK_20
29.7
NK_21
29.6
NK_22
29.4
NK_23
29.1
NK_24
28.9
NK_25
28.2
NK_26
28.0
NK_27
28.0
NK_28
27.8
NK_29
27.4
NK_30
27.2
NK_31
27.1
NK_32
27.0
NK_33
26.9
NK_34
26.8
NK_35
26.6
NK_36
26.1
NK_37
25.6
NK_38
25.6
NK_39
25.5
NK_40
25.3
NK_41
25.2
NK_42
25.1
NK_43
25.0
NK_44
25.0
NK_45
24.7
NK_46
24.7
NK_47
24.5
NK_48
24.5
NK_49
24.4
NK_50
24.4
NK_51
24.3
NK_52
24.2
NK_53
23.6
NK_54
23.3
NK_55
23.2
NK_56
23.1
NK_57
23.0
NK_58
23.0
NK_59
22.2
NK_60
22.1
NK_61
22.0
NK_62
21.8
NK_63
21.8
NK_64
21.7
NK_65
21.5
NK_66
21.5
NK_67
21.4
NK_68
21.2
NK_69
21.2
NK_70
20.8
NK_71
20.5
NK_72
20.4
NK_73
20.3
NK_74
20.0
NK_75
20.0
NK_76
20.0
NK_77
19.9
NK_78
19.9
NK_79
19.7
NK_80
18.8
NK_81
18.7
NK_82
18.7
NK_83
18.2
NK_84
17.9
NK_85
17.3
NK_86
17.3
NK_87
17.2
NK_88
17.1
NK_89
16.8
NK_90
12.5
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