A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.3
nTPM
Monaco:
23.1
nTPM
Schmiedel:
22.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.3
HPA sample
nTPM
Classical monocyte nTPM: 2.7
Samples: 6
Max nTPM: 3.7
Min nTPM: 2.1
P10809_1003
2.8
P10809_1020
3.7
P10809_1039
2.3
P10809_1058
3.2
P10809_1080
2.3
P10809_1107
2.1
Intermediate monocyte nTPM: 2.4
Samples: 6
Max nTPM: 4.8
Min nTPM: 0.1
P10809_1004
2.4
P10809_1023
4.8
P10809_1042
2.5
P10809_1061
0.1
P10809_1081
1.8
P10809_1108
2.7
Non-classical monocyte nTPM: 3.3
Samples: 5
Max nTPM: 5.5
Min nTPM: 1.3
P10809_1005
1.3
P10809_1053
3.9
P10809_1072
5.5
P10809_1082
2.6
P10809_1109
3.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.1
Monaco sample
nTPM
Classical monocyte nTPM: 19.0
Samples: 4
Max nTPM: 22.8
Min nTPM: 13.6
RHH5313_R3680
22.8
RHH5221_R3593
20.5
RHH5250_R3622
13.6
RHH5279_R3651
19.2
Intermediate monocyte nTPM: 21.6
Samples: 4
Max nTPM: 33.5
Min nTPM: 12.5
RHH5314_R3681
17.2
RHH5222_R3594
33.5
RHH5251_R3623
12.5
RHH5280_R3652
23.1
Non-classical monocyte nTPM: 23.1
Samples: 4
Max nTPM: 27.8
Min nTPM: 19.1
RHH5315_R3682
19.1
RHH5223_R3595
27.8
RHH5252_R3624
22.4
RHH5281_R3653
23.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.8
Schmiedel sample id
TPM
Classical monocyte TPM: 17.9
Samples: 91
Max TPM: 24.7
Min TPM: 13.6
MONOCYTES_1
24.7
MONOCYTES_2
23.4
MONOCYTES_3
21.7
MONOCYTES_4
21.7
MONOCYTES_5
21.7
MONOCYTES_6
21.6
MONOCYTES_7
21.2
MONOCYTES_8
21.0
MONOCYTES_9
20.9
MONOCYTES_10
20.8
MONOCYTES_11
20.8
MONOCYTES_12
20.7
MONOCYTES_13
20.4
MONOCYTES_14
20.4
MONOCYTES_15
20.4
MONOCYTES_16
20.3
MONOCYTES_17
20.3
MONOCYTES_18
20.3
MONOCYTES_19
19.9
MONOCYTES_20
19.8
MONOCYTES_21
19.8
MONOCYTES_22
19.7
MONOCYTES_23
19.7
MONOCYTES_24
19.7
MONOCYTES_25
19.6
MONOCYTES_26
19.5
MONOCYTES_27
19.3
MONOCYTES_28
19.3
MONOCYTES_29
19.3
MONOCYTES_30
19.1
MONOCYTES_31
18.9
MONOCYTES_32
18.8
MONOCYTES_33
18.7
MONOCYTES_34
18.7
MONOCYTES_35
18.5
MONOCYTES_36
18.5
MONOCYTES_37
18.4
MONOCYTES_38
18.4
MONOCYTES_39
18.3
MONOCYTES_40
18.2
MONOCYTES_41
18.1
MONOCYTES_42
18.0
MONOCYTES_43
17.9
MONOCYTES_44
17.9
MONOCYTES_45
17.9
MONOCYTES_46
17.8
MONOCYTES_47
17.7
MONOCYTES_48
17.6
MONOCYTES_49
17.6
MONOCYTES_50
17.6
MONOCYTES_51
17.5
MONOCYTES_52
17.3
MONOCYTES_53
17.2
MONOCYTES_54
17.2
MONOCYTES_55
17.2
MONOCYTES_56
17.0
MONOCYTES_57
16.8
MONOCYTES_58
16.7
MONOCYTES_59
16.7
MONOCYTES_60
16.6
MONOCYTES_61
16.5
MONOCYTES_62
16.5
MONOCYTES_63
16.5
MONOCYTES_64
16.4
MONOCYTES_65
16.3
MONOCYTES_66
16.3
MONOCYTES_67
16.2
MONOCYTES_68
16.2
MONOCYTES_69
16.1
MONOCYTES_70
16.1
MONOCYTES_71
16.0
MONOCYTES_72
15.9
MONOCYTES_73
15.7
MONOCYTES_74
15.4
MONOCYTES_75
15.4
MONOCYTES_76
15.4
MONOCYTES_77
15.4
MONOCYTES_78
15.3
MONOCYTES_79
15.3
MONOCYTES_80
15.3
MONOCYTES_81
15.3
MONOCYTES_82
15.2
MONOCYTES_83
15.0
MONOCYTES_84
15.0
MONOCYTES_85
14.9
MONOCYTES_86
14.8
MONOCYTES_87
14.5
MONOCYTES_88
14.4
MONOCYTES_89
14.0
MONOCYTES_90
13.6
MONOCYTES_91
13.6
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Non-classical monocyte TPM: 22.8
Samples: 90
Max TPM: 37.1
Min TPM: 15.5
M2_1
37.1
M2_2
33.8
M2_3
32.7
M2_4
32.7
M2_5
31.0
M2_6
29.9
M2_7
29.1
M2_8
28.8
M2_9
28.7
M2_10
28.3
M2_11
28.3
M2_12
28.1
M2_13
27.6
M2_14
27.6
M2_15
27.5
M2_16
26.9
M2_17
26.8
M2_18
26.7
M2_19
26.0
M2_20
26.0
M2_21
25.9
M2_22
25.3
M2_23
25.2
M2_24
25.1
M2_25
25.0
M2_26
24.8
M2_27
24.8
M2_28
24.5
M2_29
24.5
M2_30
24.5
M2_31
24.4
M2_32
24.3
M2_33
24.2
M2_34
23.9
M2_35
23.5
M2_36
23.3
M2_37
23.2
M2_38
23.0
M2_39
23.0
M2_40
22.9
M2_41
22.8
M2_42
22.8
M2_43
22.7
M2_44
22.6
M2_45
22.6
M2_46
22.4
M2_47
21.9
M2_48
21.9
M2_49
21.8
M2_50
21.8
M2_51
21.7
M2_52
21.6
M2_53
21.4
M2_54
21.3
M2_55
21.3
M2_56
21.3
M2_57
21.2
M2_58
20.9
M2_59
20.8
M2_60
20.7
M2_61
20.6
M2_62
20.5
M2_63
20.0
M2_64
19.9
M2_65
19.8
M2_66
19.8
M2_67
19.7
M2_68
19.7
M2_69
19.5
M2_70
19.2
M2_71
19.1
M2_72
19.0
M2_73
19.0
M2_74
18.8
M2_75
18.7
M2_76
18.4
M2_77
18.3
M2_78
18.2
M2_79
17.5
M2_80
17.2
M2_81
17.1
M2_82
16.9
M2_83
16.9
M2_84
16.6
M2_85
16.5
M2_86
16.3
M2_87
16.2
M2_88
16.0
M2_89
15.5
M2_90
15.5
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