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BETA
  • SUMMARY

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  • RPS5
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:2229.0 nTPM
Monaco:1012.9 nTPM
Schmiedel:451.9 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

2229.0
HPA sample nTPM
Memory B-cell
nTPM: 2229.0
Samples: 6

Max nTPM: 3977.5
Min nTPM: 1239.9
P10809_1017 1239.9
P10809_1025 2122.3
P10809_1044 3977.5
P10809_1063 1971.8
P10809_1092 1946.9
P10809_1105 2115.6
Naive B-cell
nTPM: 2082.0
Samples: 6

Max nTPM: 3533.1
Min nTPM: 1326.2
P10809_1011 1326.2
P10809_1029 1925.6
P10809_1048 3533.1
P10809_1067 1924.6
P10809_1091 1757.1
P10809_1104 2025.1

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

1012.9
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 954.4
Samples: 4

Max nTPM: 1474.9
Min nTPM: 322.7
RHH5310_R3677 1208.0
RHH5218_R3590 322.7
RHH5247_R3619 1474.9
RHH5276_R3648 811.8
Naive B-cell
nTPM: 1012.9
Samples: 4

Max nTPM: 1688.4
Min nTPM: 563.3
RHH5308_R3675 1688.4
RHH5216_R3588 563.3
RHH5245_R3617 1120.4
RHH5274_R3646 679.6
Non-switched memory B-cell
nTPM: 840.4
Samples: 4

Max nTPM: 1401.7
Min nTPM: 507.0
RHH5309_R3676 1401.7
RHH5217_R3589 507.0
RHH5246_R3618 654.0
RHH5275_R3647 798.8
Plasmablast
nTPM: 965.6
Samples: 4

Max nTPM: 1232.4
Min nTPM: 703.3
RHH5312_R3679 1232.4
RHH5220_R3592 703.3
RHH5249_R3621 1034.8
RHH5278_R3650 892.0
Switched memory B-cell
nTPM: 840.6
Samples: 4

Max nTPM: 1591.3
Min nTPM: 418.2
RHH5311_R3678 1591.3
RHH5219_R3591 689.4
RHH5248_R3620 418.2
RHH5277_R3649 663.3

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

451.9
Schmiedel sample id TPM
Naive B-cell
TPM: 451.9
Samples: 91

Max TPM: 733.7
Min TPM: 92.2
B_CELL_NAIVE_1 733.7
B_CELL_NAIVE_2 711.3
B_CELL_NAIVE_3 709.3
B_CELL_NAIVE_4 703.7
B_CELL_NAIVE_5 694.0
B_CELL_NAIVE_6 688.7
B_CELL_NAIVE_7 685.8
B_CELL_NAIVE_8 675.5
B_CELL_NAIVE_9 669.5
B_CELL_NAIVE_10 668.6
B_CELL_NAIVE_11 657.3
B_CELL_NAIVE_12 630.2
B_CELL_NAIVE_13 626.4
B_CELL_NAIVE_14 617.1
B_CELL_NAIVE_15 616.0
B_CELL_NAIVE_16 615.6
B_CELL_NAIVE_17 597.1
B_CELL_NAIVE_18 596.0
B_CELL_NAIVE_19 591.6
B_CELL_NAIVE_20 590.8
B_CELL_NAIVE_21 588.1
B_CELL_NAIVE_22 583.0
B_CELL_NAIVE_23 580.7
B_CELL_NAIVE_24 574.8
B_CELL_NAIVE_25 568.2
B_CELL_NAIVE_26 561.6
B_CELL_NAIVE_27 553.6
B_CELL_NAIVE_28 549.9
B_CELL_NAIVE_29 548.9
B_CELL_NAIVE_30 548.1
B_CELL_NAIVE_31 546.0
B_CELL_NAIVE_32 537.8
B_CELL_NAIVE_33 535.4
B_CELL_NAIVE_34 535.1
B_CELL_NAIVE_35 529.2
B_CELL_NAIVE_36 528.2
B_CELL_NAIVE_37 524.3
B_CELL_NAIVE_38 524.2
B_CELL_NAIVE_39 519.3
B_CELL_NAIVE_40 513.4
B_CELL_NAIVE_41 511.8
B_CELL_NAIVE_42 508.8
B_CELL_NAIVE_43 484.7
B_CELL_NAIVE_44 484.4
B_CELL_NAIVE_45 476.4
B_CELL_NAIVE_46 471.2
B_CELL_NAIVE_47 470.5
B_CELL_NAIVE_48 449.9
B_CELL_NAIVE_49 445.5
B_CELL_NAIVE_50 437.5
B_CELL_NAIVE_51 433.9
B_CELL_NAIVE_52 432.4
B_CELL_NAIVE_53 427.4
B_CELL_NAIVE_54 423.7
B_CELL_NAIVE_55 418.2
B_CELL_NAIVE_56 416.4
B_CELL_NAIVE_57 415.1
B_CELL_NAIVE_58 414.7
B_CELL_NAIVE_59 410.8
B_CELL_NAIVE_60 409.3
B_CELL_NAIVE_61 408.6
B_CELL_NAIVE_62 394.9
B_CELL_NAIVE_63 380.5
B_CELL_NAIVE_64 377.5
B_CELL_NAIVE_65 368.0
B_CELL_NAIVE_66 365.0
B_CELL_NAIVE_67 358.6
B_CELL_NAIVE_68 345.9
B_CELL_NAIVE_69 339.7
B_CELL_NAIVE_70 334.5
B_CELL_NAIVE_71 315.8
B_CELL_NAIVE_72 302.8
B_CELL_NAIVE_73 296.4
B_CELL_NAIVE_74 293.1
B_CELL_NAIVE_75 281.4
B_CELL_NAIVE_76 280.5
B_CELL_NAIVE_77 275.6
B_CELL_NAIVE_78 268.7
B_CELL_NAIVE_79 247.9
B_CELL_NAIVE_80 243.0
B_CELL_NAIVE_81 220.3
B_CELL_NAIVE_82 216.1
B_CELL_NAIVE_83 190.2
B_CELL_NAIVE_84 170.0
B_CELL_NAIVE_85 156.8
B_CELL_NAIVE_86 141.3
B_CELL_NAIVE_87 137.9
B_CELL_NAIVE_88 121.3
B_CELL_NAIVE_89 113.9
B_CELL_NAIVE_90 110.9
B_CELL_NAIVE_91 92.2
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