A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2229.0
nTPM
Monaco:
1012.9
nTPM
Schmiedel:
451.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2229.0
HPA sample
nTPM
Memory B-cell nTPM: 2229.0
Samples: 6
Max nTPM: 3977.5
Min nTPM: 1239.9
P10809_1017
1239.9
P10809_1025
2122.3
P10809_1044
3977.5
P10809_1063
1971.8
P10809_1092
1946.9
P10809_1105
2115.6
Naive B-cell nTPM: 2082.0
Samples: 6
Max nTPM: 3533.1
Min nTPM: 1326.2
P10809_1011
1326.2
P10809_1029
1925.6
P10809_1048
3533.1
P10809_1067
1924.6
P10809_1091
1757.1
P10809_1104
2025.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1012.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 954.4
Samples: 4
Max nTPM: 1474.9
Min nTPM: 322.7
RHH5310_R3677
1208.0
RHH5218_R3590
322.7
RHH5247_R3619
1474.9
RHH5276_R3648
811.8
Naive B-cell nTPM: 1012.9
Samples: 4
Max nTPM: 1688.4
Min nTPM: 563.3
RHH5308_R3675
1688.4
RHH5216_R3588
563.3
RHH5245_R3617
1120.4
RHH5274_R3646
679.6
Non-switched memory B-cell nTPM: 840.4
Samples: 4
Max nTPM: 1401.7
Min nTPM: 507.0
RHH5309_R3676
1401.7
RHH5217_R3589
507.0
RHH5246_R3618
654.0
RHH5275_R3647
798.8
Plasmablast nTPM: 965.6
Samples: 4
Max nTPM: 1232.4
Min nTPM: 703.3
RHH5312_R3679
1232.4
RHH5220_R3592
703.3
RHH5249_R3621
1034.8
RHH5278_R3650
892.0
Switched memory B-cell nTPM: 840.6
Samples: 4
Max nTPM: 1591.3
Min nTPM: 418.2
RHH5311_R3678
1591.3
RHH5219_R3591
689.4
RHH5248_R3620
418.2
RHH5277_R3649
663.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
451.9
Schmiedel sample id
TPM
Naive B-cell TPM: 451.9
Samples: 91
Max TPM: 733.7
Min TPM: 92.2
B_CELL_NAIVE_1
733.7
B_CELL_NAIVE_2
711.3
B_CELL_NAIVE_3
709.3
B_CELL_NAIVE_4
703.7
B_CELL_NAIVE_5
694.0
B_CELL_NAIVE_6
688.7
B_CELL_NAIVE_7
685.8
B_CELL_NAIVE_8
675.5
B_CELL_NAIVE_9
669.5
B_CELL_NAIVE_10
668.6
B_CELL_NAIVE_11
657.3
B_CELL_NAIVE_12
630.2
B_CELL_NAIVE_13
626.4
B_CELL_NAIVE_14
617.1
B_CELL_NAIVE_15
616.0
B_CELL_NAIVE_16
615.6
B_CELL_NAIVE_17
597.1
B_CELL_NAIVE_18
596.0
B_CELL_NAIVE_19
591.6
B_CELL_NAIVE_20
590.8
B_CELL_NAIVE_21
588.1
B_CELL_NAIVE_22
583.0
B_CELL_NAIVE_23
580.7
B_CELL_NAIVE_24
574.8
B_CELL_NAIVE_25
568.2
B_CELL_NAIVE_26
561.6
B_CELL_NAIVE_27
553.6
B_CELL_NAIVE_28
549.9
B_CELL_NAIVE_29
548.9
B_CELL_NAIVE_30
548.1
B_CELL_NAIVE_31
546.0
B_CELL_NAIVE_32
537.8
B_CELL_NAIVE_33
535.4
B_CELL_NAIVE_34
535.1
B_CELL_NAIVE_35
529.2
B_CELL_NAIVE_36
528.2
B_CELL_NAIVE_37
524.3
B_CELL_NAIVE_38
524.2
B_CELL_NAIVE_39
519.3
B_CELL_NAIVE_40
513.4
B_CELL_NAIVE_41
511.8
B_CELL_NAIVE_42
508.8
B_CELL_NAIVE_43
484.7
B_CELL_NAIVE_44
484.4
B_CELL_NAIVE_45
476.4
B_CELL_NAIVE_46
471.2
B_CELL_NAIVE_47
470.5
B_CELL_NAIVE_48
449.9
B_CELL_NAIVE_49
445.5
B_CELL_NAIVE_50
437.5
B_CELL_NAIVE_51
433.9
B_CELL_NAIVE_52
432.4
B_CELL_NAIVE_53
427.4
B_CELL_NAIVE_54
423.7
B_CELL_NAIVE_55
418.2
B_CELL_NAIVE_56
416.4
B_CELL_NAIVE_57
415.1
B_CELL_NAIVE_58
414.7
B_CELL_NAIVE_59
410.8
B_CELL_NAIVE_60
409.3
B_CELL_NAIVE_61
408.6
B_CELL_NAIVE_62
394.9
B_CELL_NAIVE_63
380.5
B_CELL_NAIVE_64
377.5
B_CELL_NAIVE_65
368.0
B_CELL_NAIVE_66
365.0
B_CELL_NAIVE_67
358.6
B_CELL_NAIVE_68
345.9
B_CELL_NAIVE_69
339.7
B_CELL_NAIVE_70
334.5
B_CELL_NAIVE_71
315.8
B_CELL_NAIVE_72
302.8
B_CELL_NAIVE_73
296.4
B_CELL_NAIVE_74
293.1
B_CELL_NAIVE_75
281.4
B_CELL_NAIVE_76
280.5
B_CELL_NAIVE_77
275.6
B_CELL_NAIVE_78
268.7
B_CELL_NAIVE_79
247.9
B_CELL_NAIVE_80
243.0
B_CELL_NAIVE_81
220.3
B_CELL_NAIVE_82
216.1
B_CELL_NAIVE_83
190.2
B_CELL_NAIVE_84
170.0
B_CELL_NAIVE_85
156.8
B_CELL_NAIVE_86
141.3
B_CELL_NAIVE_87
137.9
B_CELL_NAIVE_88
121.3
B_CELL_NAIVE_89
113.9
B_CELL_NAIVE_90
110.9
B_CELL_NAIVE_91
92.2
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