A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1024.6
nTPM
Monaco:
249.8
nTPM
Schmiedel:
204.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1024.6
HPA sample
nTPM
NK-cell nTPM: 1024.6
Samples: 6
Max nTPM: 1340.6
Min nTPM: 586.7
P10809_1013
586.7
P10809_1033
1328.3
P10809_1052
1113.7
P10809_1071
1340.6
P10809_1093
611.5
P10809_1103
1166.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
249.8
Monaco sample
nTPM
NK-cell nTPM: 249.8
Samples: 4
Max nTPM: 336.5
Min nTPM: 204.2
RHH5316_R3683
336.5
RHH5224_R3596
245.4
RHH5253_R3625
204.2
RHH5282_R3654
213.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
204.8
Schmiedel sample id
TPM
NK-cell TPM: 204.8
Samples: 90
Max TPM: 343.2
Min TPM: 68.0
NK_1
343.2
NK_2
333.8
NK_3
319.4
NK_4
317.7
NK_5
316.4
NK_6
308.7
NK_7
305.2
NK_8
289.1
NK_9
284.9
NK_10
281.5
NK_11
279.9
NK_12
278.7
NK_13
278.6
NK_14
278.4
NK_15
275.9
NK_16
274.7
NK_17
268.8
NK_18
267.2
NK_19
260.2
NK_20
259.9
NK_21
258.2
NK_22
256.8
NK_23
256.6
NK_24
254.5
NK_25
247.2
NK_26
244.0
NK_27
240.0
NK_28
239.1
NK_29
237.4
NK_30
237.1
NK_31
234.2
NK_32
233.0
NK_33
230.1
NK_34
229.3
NK_35
226.3
NK_36
225.0
NK_37
223.4
NK_38
221.4
NK_39
220.4
NK_40
220.2
NK_41
218.5
NK_42
215.0
NK_43
214.6
NK_44
213.6
NK_45
212.9
NK_46
209.8
NK_47
207.9
NK_48
205.1
NK_49
204.1
NK_50
202.8
NK_51
202.2
NK_52
199.1
NK_53
198.8
NK_54
194.5
NK_55
189.0
NK_56
182.4
NK_57
181.2
NK_58
177.9
NK_59
174.8
NK_60
174.4
NK_61
168.4
NK_62
167.5
NK_63
166.6
NK_64
166.6
NK_65
162.3
NK_66
160.6
NK_67
159.8
NK_68
156.5
NK_69
153.7
NK_70
151.6
NK_71
149.7
NK_72
147.8
NK_73
147.2
NK_74
144.1
NK_75
136.4
NK_76
127.7
NK_77
126.0
NK_78
120.7
NK_79
118.0
NK_80
117.6
NK_81
117.5
NK_82
107.4
NK_83
105.5
NK_84
105.4
NK_85
103.9
NK_86
98.4
NK_87
87.8
NK_88
79.7
NK_89
75.3
NK_90
68.0
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