A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
654.4
nTPM
Monaco:
411.2
nTPM
Schmiedel:
174.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
654.4
HPA sample
nTPM
Classical monocyte nTPM: 654.4
Samples: 6
Max nTPM: 738.6
Min nTPM: 483.7
P10809_1003
738.6
P10809_1020
640.1
P10809_1039
737.2
P10809_1058
620.2
P10809_1080
483.7
P10809_1107
706.5
Intermediate monocyte nTPM: 622.7
Samples: 6
Max nTPM: 900.9
Min nTPM: 372.4
P10809_1004
467.4
P10809_1023
783.1
P10809_1042
710.2
P10809_1061
372.4
P10809_1081
502.0
P10809_1108
900.9
Non-classical monocyte nTPM: 469.8
Samples: 5
Max nTPM: 620.6
Min nTPM: 361.0
P10809_1005
492.0
P10809_1053
512.8
P10809_1072
362.5
P10809_1082
361.0
P10809_1109
620.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
411.2
Monaco sample
nTPM
Classical monocyte nTPM: 297.1
Samples: 4
Max nTPM: 363.6
Min nTPM: 188.7
RHH5313_R3680
363.6
RHH5221_R3593
188.7
RHH5250_R3622
316.2
RHH5279_R3651
319.9
Intermediate monocyte nTPM: 411.2
Samples: 4
Max nTPM: 571.6
Min nTPM: 341.2
RHH5314_R3681
571.6
RHH5222_R3594
357.7
RHH5251_R3623
341.2
RHH5280_R3652
374.1
Non-classical monocyte nTPM: 272.1
Samples: 4
Max nTPM: 396.3
Min nTPM: 209.1
RHH5315_R3682
396.3
RHH5223_R3595
214.9
RHH5252_R3624
268.2
RHH5281_R3653
209.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
174.1
Schmiedel sample id
TPM
Classical monocyte TPM: 174.1
Samples: 91
Max TPM: 269.5
Min TPM: 87.2
MONOCYTES_1
269.5
MONOCYTES_2
266.0
MONOCYTES_3
262.6
MONOCYTES_4
250.3
MONOCYTES_5
249.2
MONOCYTES_6
242.5
MONOCYTES_7
234.0
MONOCYTES_8
228.8
MONOCYTES_9
228.5
MONOCYTES_10
228.4
MONOCYTES_11
226.0
MONOCYTES_12
222.3
MONOCYTES_13
220.6
MONOCYTES_14
220.3
MONOCYTES_15
219.9
MONOCYTES_16
218.4
MONOCYTES_17
217.9
MONOCYTES_18
212.2
MONOCYTES_19
210.6
MONOCYTES_20
209.5
MONOCYTES_21
207.6
MONOCYTES_22
206.2
MONOCYTES_23
204.8
MONOCYTES_24
204.3
MONOCYTES_25
203.7
MONOCYTES_26
201.4
MONOCYTES_27
197.2
MONOCYTES_28
195.7
MONOCYTES_29
194.9
MONOCYTES_30
194.3
MONOCYTES_31
192.5
MONOCYTES_32
190.7
MONOCYTES_33
190.1
MONOCYTES_34
189.1
MONOCYTES_35
187.5
MONOCYTES_36
187.1
MONOCYTES_37
186.1
MONOCYTES_38
184.6
MONOCYTES_39
184.4
MONOCYTES_40
184.4
MONOCYTES_41
183.8
MONOCYTES_42
176.9
MONOCYTES_43
175.5
MONOCYTES_44
174.4
MONOCYTES_45
174.3
MONOCYTES_46
173.8
MONOCYTES_47
173.2
MONOCYTES_48
172.5
MONOCYTES_49
171.2
MONOCYTES_50
170.4
MONOCYTES_51
169.3
MONOCYTES_52
169.2
MONOCYTES_53
167.0
MONOCYTES_54
166.0
MONOCYTES_55
165.2
MONOCYTES_56
163.2
MONOCYTES_57
161.7
MONOCYTES_58
160.2
MONOCYTES_59
159.5
MONOCYTES_60
158.7
MONOCYTES_61
154.0
MONOCYTES_62
151.9
MONOCYTES_63
151.5
MONOCYTES_64
150.7
MONOCYTES_65
149.6
MONOCYTES_66
146.6
MONOCYTES_67
146.3
MONOCYTES_68
145.6
MONOCYTES_69
143.7
MONOCYTES_70
143.6
MONOCYTES_71
142.8
MONOCYTES_72
141.5
MONOCYTES_73
140.4
MONOCYTES_74
136.4
MONOCYTES_75
136.1
MONOCYTES_76
136.1
MONOCYTES_77
135.9
MONOCYTES_78
131.7
MONOCYTES_79
123.6
MONOCYTES_80
117.2
MONOCYTES_81
116.9
MONOCYTES_82
115.3
MONOCYTES_83
111.9
MONOCYTES_84
100.7
MONOCYTES_85
100.4
MONOCYTES_86
98.3
MONOCYTES_87
96.3
MONOCYTES_88
96.3
MONOCYTES_89
95.0
MONOCYTES_90
91.3
MONOCYTES_91
87.2
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Non-classical monocyte TPM: 152.7
Samples: 90
Max TPM: 310.9
Min TPM: 51.9
M2_1
310.9
M2_2
306.3
M2_3
233.5
M2_4
222.4
M2_5
222.1
M2_6
219.1
M2_7
215.3
M2_8
214.0
M2_9
211.9
M2_10
211.6
M2_11
209.0
M2_12
209.0
M2_13
206.0
M2_14
200.1
M2_15
199.0
M2_16
198.0
M2_17
197.9
M2_18
197.8
M2_19
191.4
M2_20
191.3
M2_21
191.0
M2_22
190.2
M2_23
185.0
M2_24
183.7
M2_25
181.5
M2_26
180.9
M2_27
177.8
M2_28
175.2
M2_29
173.8
M2_30
173.0
M2_31
172.9
M2_32
172.8
M2_33
172.7
M2_34
171.6
M2_35
169.9
M2_36
168.5
M2_37
168.0
M2_38
163.9
M2_39
162.1
M2_40
161.4
M2_41
159.5
M2_42
159.4
M2_43
157.5
M2_44
156.8
M2_45
155.3
M2_46
155.2
M2_47
154.9
M2_48
153.1
M2_49
152.5
M2_50
148.7
M2_51
148.5
M2_52
147.7
M2_53
147.0
M2_54
146.9
M2_55
146.1
M2_56
143.7
M2_57
143.5
M2_58
142.9
M2_59
139.8
M2_60
135.6
M2_61
127.5
M2_62
127.1
M2_63
124.4
M2_64
122.5
M2_65
122.4
M2_66
120.9
M2_67
119.4
M2_68
117.7
M2_69
117.2
M2_70
108.2
M2_71
107.4
M2_72
107.2
M2_73
105.3
M2_74
101.4
M2_75
99.7
M2_76
96.4
M2_77
94.3
M2_78
94.1
M2_79
92.1
M2_80
89.1
M2_81
83.7
M2_82
79.3
M2_83
78.1
M2_84
76.3
M2_85
74.3
M2_86
71.8
M2_87
67.7
M2_88
55.4
M2_89
52.1
M2_90
51.9
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