A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
58.9
nTPM
Monaco:
250.9
nTPM
Schmiedel:
944.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.9
HPA sample
nTPM
Memory B-cell nTPM: 43.9
Samples: 6
Max nTPM: 52.5
Min nTPM: 26.8
P10809_1017
26.8
P10809_1025
42.0
P10809_1044
43.9
P10809_1063
50.9
P10809_1092
52.5
P10809_1105
47.2
Naive B-cell nTPM: 58.9
Samples: 6
Max nTPM: 73.5
Min nTPM: 37.1
P10809_1011
37.1
P10809_1029
53.5
P10809_1048
67.4
P10809_1067
73.5
P10809_1091
61.4
P10809_1104
60.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
250.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 190.2
Samples: 4
Max nTPM: 227.6
Min nTPM: 140.1
RHH5310_R3677
227.6
RHH5218_R3590
185.3
RHH5247_R3619
140.1
RHH5276_R3648
207.7
Naive B-cell nTPM: 235.3
Samples: 4
Max nTPM: 260.9
Min nTPM: 205.0
RHH5308_R3675
251.1
RHH5216_R3588
224.2
RHH5245_R3617
205.0
RHH5274_R3646
260.9
Non-switched memory B-cell nTPM: 141.2
Samples: 4
Max nTPM: 150.4
Min nTPM: 131.8
RHH5309_R3676
131.8
RHH5217_R3589
150.4
RHH5246_R3618
139.0
RHH5275_R3647
143.5
Plasmablast nTPM: 71.3
Samples: 4
Max nTPM: 92.0
Min nTPM: 53.0
RHH5312_R3679
62.3
RHH5220_R3592
77.7
RHH5249_R3621
92.0
RHH5278_R3650
53.0
Switched memory B-cell nTPM: 250.9
Samples: 4
Max nTPM: 326.1
Min nTPM: 188.9
RHH5311_R3678
326.1
RHH5219_R3591
188.9
RHH5248_R3620
258.8
RHH5277_R3649
229.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
944.5
Schmiedel sample id
TPM
Naive B-cell TPM: 944.5
Samples: 91
Max TPM: 2015.7
Min TPM: 562.3
B_CELL_NAIVE_1
2015.7
B_CELL_NAIVE_2
1500.6
B_CELL_NAIVE_3
1491.3
B_CELL_NAIVE_4
1444.1
B_CELL_NAIVE_5
1430.3
B_CELL_NAIVE_6
1405.2
B_CELL_NAIVE_7
1234.8
B_CELL_NAIVE_8
1192.6
B_CELL_NAIVE_9
1177.3
B_CELL_NAIVE_10
1159.2
B_CELL_NAIVE_11
1141.5
B_CELL_NAIVE_12
1135.0
B_CELL_NAIVE_13
1124.5
B_CELL_NAIVE_14
1110.7
B_CELL_NAIVE_15
1095.3
B_CELL_NAIVE_16
1090.0
B_CELL_NAIVE_17
1088.8
B_CELL_NAIVE_18
1085.2
B_CELL_NAIVE_19
1076.0
B_CELL_NAIVE_20
1059.0
B_CELL_NAIVE_21
1041.9
B_CELL_NAIVE_22
1036.7
B_CELL_NAIVE_23
1030.3
B_CELL_NAIVE_24
1024.3
B_CELL_NAIVE_25
1023.7
B_CELL_NAIVE_26
1017.6
B_CELL_NAIVE_27
1013.1
B_CELL_NAIVE_28
1005.4
B_CELL_NAIVE_29
998.0
B_CELL_NAIVE_30
994.6
B_CELL_NAIVE_31
993.8
B_CELL_NAIVE_32
991.4
B_CELL_NAIVE_33
988.8
B_CELL_NAIVE_34
988.3
B_CELL_NAIVE_35
979.7
B_CELL_NAIVE_36
977.8
B_CELL_NAIVE_37
977.1
B_CELL_NAIVE_38
969.7
B_CELL_NAIVE_39
966.0
B_CELL_NAIVE_40
957.4
B_CELL_NAIVE_41
953.9
B_CELL_NAIVE_42
943.5
B_CELL_NAIVE_43
940.8
B_CELL_NAIVE_44
936.0
B_CELL_NAIVE_45
933.8
B_CELL_NAIVE_46
906.9
B_CELL_NAIVE_47
904.8
B_CELL_NAIVE_48
902.3
B_CELL_NAIVE_49
891.9
B_CELL_NAIVE_50
884.9
B_CELL_NAIVE_51
884.7
B_CELL_NAIVE_52
883.4
B_CELL_NAIVE_53
882.2
B_CELL_NAIVE_54
879.7
B_CELL_NAIVE_55
878.1
B_CELL_NAIVE_56
871.5
B_CELL_NAIVE_57
869.4
B_CELL_NAIVE_58
860.5
B_CELL_NAIVE_59
846.4
B_CELL_NAIVE_60
839.3
B_CELL_NAIVE_61
837.2
B_CELL_NAIVE_62
827.0
B_CELL_NAIVE_63
820.2
B_CELL_NAIVE_64
815.9
B_CELL_NAIVE_65
813.2
B_CELL_NAIVE_66
804.7
B_CELL_NAIVE_67
803.1
B_CELL_NAIVE_68
787.7
B_CELL_NAIVE_69
786.3
B_CELL_NAIVE_70
784.8
B_CELL_NAIVE_71
776.7
B_CELL_NAIVE_72
771.2
B_CELL_NAIVE_73
770.6
B_CELL_NAIVE_74
769.5
B_CELL_NAIVE_75
764.7
B_CELL_NAIVE_76
762.8
B_CELL_NAIVE_77
738.1
B_CELL_NAIVE_78
736.0
B_CELL_NAIVE_79
735.9
B_CELL_NAIVE_80
727.0
B_CELL_NAIVE_81
722.6
B_CELL_NAIVE_82
713.5
B_CELL_NAIVE_83
712.1
B_CELL_NAIVE_84
682.7
B_CELL_NAIVE_85
678.5
B_CELL_NAIVE_86
675.8
B_CELL_NAIVE_87
670.2
B_CELL_NAIVE_88
669.5
B_CELL_NAIVE_89
667.9
B_CELL_NAIVE_90
631.1
B_CELL_NAIVE_91
562.3
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