A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
31.6
nTPM
Monaco:
52.1
nTPM
Schmiedel:
213.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.6
HPA sample
nTPM
NK-cell nTPM: 31.6
Samples: 6
Max nTPM: 45.7
Min nTPM: 20.2
P10809_1013
20.2
P10809_1033
33.9
P10809_1052
40.9
P10809_1071
45.7
P10809_1093
24.0
P10809_1103
25.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
52.1
Monaco sample
nTPM
NK-cell nTPM: 52.1
Samples: 4
Max nTPM: 62.0
Min nTPM: 40.5
RHH5316_R3683
40.5
RHH5224_R3596
62.0
RHH5253_R3625
52.8
RHH5282_R3654
53.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
213.6
Schmiedel sample id
TPM
NK-cell TPM: 213.6
Samples: 90
Max TPM: 315.4
Min TPM: 153.7
NK_1
315.4
NK_2
311.9
NK_3
307.9
NK_4
277.0
NK_5
276.4
NK_6
274.3
NK_7
271.1
NK_8
269.1
NK_9
265.1
NK_10
263.2
NK_11
261.1
NK_12
261.1
NK_13
254.1
NK_14
251.3
NK_15
251.2
NK_16
248.6
NK_17
245.6
NK_18
240.7
NK_19
240.1
NK_20
237.5
NK_21
232.9
NK_22
232.6
NK_23
232.3
NK_24
227.4
NK_25
225.5
NK_26
223.3
NK_27
222.1
NK_28
222.1
NK_29
220.1
NK_30
219.3
NK_31
218.8
NK_32
217.8
NK_33
217.2
NK_34
217.2
NK_35
216.2
NK_36
214.9
NK_37
214.7
NK_38
214.0
NK_39
214.0
NK_40
212.9
NK_41
212.8
NK_42
212.1
NK_43
209.6
NK_44
209.3
NK_45
209.3
NK_46
209.2
NK_47
208.6
NK_48
208.4
NK_49
207.4
NK_50
203.9
NK_51
203.4
NK_52
203.3
NK_53
203.3
NK_54
201.3
NK_55
201.3
NK_56
201.3
NK_57
199.4
NK_58
198.1
NK_59
198.0
NK_60
195.7
NK_61
195.3
NK_62
193.2
NK_63
192.8
NK_64
192.1
NK_65
191.8
NK_66
191.3
NK_67
189.8
NK_68
189.2
NK_69
187.9
NK_70
186.3
NK_71
186.2
NK_72
185.5
NK_73
184.6
NK_74
183.6
NK_75
183.3
NK_76
181.4
NK_77
180.6
NK_78
179.4
NK_79
178.2
NK_80
177.0
NK_81
174.3
NK_82
173.6
NK_83
171.1
NK_84
168.4
NK_85
168.3
NK_86
164.8
NK_87
164.2
NK_88
161.9
NK_89
161.6
NK_90
153.7
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