A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
197.0
nTPM
Monaco:
803.9
nTPM
Schmiedel:
717.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
197.0
HPA sample
nTPM
Classical monocyte nTPM: 88.0
Samples: 6
Max nTPM: 110.2
Min nTPM: 61.4
P10809_1003
81.5
P10809_1020
95.8
P10809_1039
110.2
P10809_1058
86.0
P10809_1080
92.9
P10809_1107
61.4
Intermediate monocyte nTPM: 154.0
Samples: 6
Max nTPM: 218.9
Min nTPM: 86.8
P10809_1004
151.7
P10809_1023
155.8
P10809_1042
167.9
P10809_1061
218.9
P10809_1081
143.0
P10809_1108
86.8
Non-classical monocyte nTPM: 197.0
Samples: 5
Max nTPM: 315.9
Min nTPM: 109.0
P10809_1005
168.4
P10809_1053
247.6
P10809_1072
315.9
P10809_1082
109.0
P10809_1109
144.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
803.9
Monaco sample
nTPM
Classical monocyte nTPM: 357.0
Samples: 4
Max nTPM: 407.3
Min nTPM: 264.5
RHH5313_R3680
407.3
RHH5221_R3593
371.8
RHH5250_R3622
264.5
RHH5279_R3651
384.3
Intermediate monocyte nTPM: 642.1
Samples: 4
Max nTPM: 776.1
Min nTPM: 509.1
RHH5314_R3681
592.5
RHH5222_R3594
776.1
RHH5251_R3623
509.1
RHH5280_R3652
690.5
Non-classical monocyte nTPM: 803.9
Samples: 4
Max nTPM: 948.8
Min nTPM: 602.4
RHH5315_R3682
723.6
RHH5223_R3595
948.8
RHH5252_R3624
602.4
RHH5281_R3653
940.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
717.5
Schmiedel sample id
TPM
Classical monocyte TPM: 458.8
Samples: 91
Max TPM: 667.0
Min TPM: 332.7
MONOCYTES_1
667.0
MONOCYTES_2
640.4
MONOCYTES_3
626.5
MONOCYTES_4
612.0
MONOCYTES_5
605.0
MONOCYTES_6
590.1
MONOCYTES_7
582.8
MONOCYTES_8
569.1
MONOCYTES_9
550.4
MONOCYTES_10
549.1
MONOCYTES_11
548.5
MONOCYTES_12
536.9
MONOCYTES_13
535.7
MONOCYTES_14
531.6
MONOCYTES_15
528.1
MONOCYTES_16
527.2
MONOCYTES_17
526.1
MONOCYTES_18
516.9
MONOCYTES_19
515.2
MONOCYTES_20
513.7
MONOCYTES_21
510.8
MONOCYTES_22
509.4
MONOCYTES_23
505.8
MONOCYTES_24
503.3
MONOCYTES_25
501.8
MONOCYTES_26
500.4
MONOCYTES_27
499.9
MONOCYTES_28
495.6
MONOCYTES_29
491.2
MONOCYTES_30
491.2
MONOCYTES_31
481.6
MONOCYTES_32
480.7
MONOCYTES_33
479.2
MONOCYTES_34
479.2
MONOCYTES_35
477.0
MONOCYTES_36
472.3
MONOCYTES_37
472.2
MONOCYTES_38
470.6
MONOCYTES_39
469.6
MONOCYTES_40
467.4
MONOCYTES_41
465.6
MONOCYTES_42
465.5
MONOCYTES_43
465.1
MONOCYTES_44
463.0
MONOCYTES_45
460.5
MONOCYTES_46
460.0
MONOCYTES_47
455.2
MONOCYTES_48
453.8
MONOCYTES_49
453.7
MONOCYTES_50
453.2
MONOCYTES_51
448.7
MONOCYTES_52
446.0
MONOCYTES_53
445.1
MONOCYTES_54
440.4
MONOCYTES_55
437.3
MONOCYTES_56
435.1
MONOCYTES_57
432.8
MONOCYTES_58
432.1
MONOCYTES_59
420.8
MONOCYTES_60
418.8
MONOCYTES_61
417.8
MONOCYTES_62
417.5
MONOCYTES_63
410.4
MONOCYTES_64
405.6
MONOCYTES_65
404.6
MONOCYTES_66
403.2
MONOCYTES_67
401.9
MONOCYTES_68
397.8
MONOCYTES_69
394.7
MONOCYTES_70
387.6
MONOCYTES_71
387.5
MONOCYTES_72
387.4
MONOCYTES_73
387.2
MONOCYTES_74
383.0
MONOCYTES_75
381.6
MONOCYTES_76
377.3
MONOCYTES_77
377.0
MONOCYTES_78
375.0
MONOCYTES_79
373.9
MONOCYTES_80
373.2
MONOCYTES_81
371.9
MONOCYTES_82
370.7
MONOCYTES_83
368.1
MONOCYTES_84
367.7
MONOCYTES_85
362.0
MONOCYTES_86
359.0
MONOCYTES_87
354.6
MONOCYTES_88
345.7
MONOCYTES_89
344.0
MONOCYTES_90
342.9
MONOCYTES_91
332.7
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Non-classical monocyte TPM: 717.5
Samples: 90
Max TPM: 1312.1
Min TPM: 509.9
M2_1
1312.1
M2_2
1106.8
M2_3
1009.4
M2_4
973.0
M2_5
969.3
M2_6
920.2
M2_7
919.8
M2_8
847.9
M2_9
843.5
M2_10
836.6
M2_11
834.5
M2_12
827.9
M2_13
825.8
M2_14
824.0
M2_15
820.2
M2_16
813.6
M2_17
807.7
M2_18
800.6
M2_19
797.7
M2_20
784.2
M2_21
757.4
M2_22
754.4
M2_23
753.9
M2_24
753.3
M2_25
745.2
M2_26
744.8
M2_27
743.5
M2_28
741.8
M2_29
736.8
M2_30
732.4
M2_31
728.9
M2_32
728.4
M2_33
720.3
M2_34
717.8
M2_35
716.7
M2_36
716.3
M2_37
716.1
M2_38
714.3
M2_39
711.3
M2_40
707.7
M2_41
707.3
M2_42
705.7
M2_43
702.4
M2_44
702.0
M2_45
697.3
M2_46
695.8
M2_47
694.8
M2_48
692.8
M2_49
690.5
M2_50
689.8
M2_51
682.0
M2_52
671.5
M2_53
669.1
M2_54
667.5
M2_55
667.2
M2_56
666.5
M2_57
664.3
M2_58
664.3
M2_59
662.3
M2_60
662.0
M2_61
657.7
M2_62
654.2
M2_63
653.2
M2_64
652.1
M2_65
650.4
M2_66
650.3
M2_67
647.5
M2_68
647.1
M2_69
646.4
M2_70
642.8
M2_71
641.3
M2_72
639.2
M2_73
638.1
M2_74
635.6
M2_75
630.7
M2_76
626.4
M2_77
626.2
M2_78
624.1
M2_79
608.6
M2_80
602.4
M2_81
587.1
M2_82
587.1
M2_83
585.9
M2_84
577.8
M2_85
574.3
M2_86
566.7
M2_87
556.9
M2_88
550.1
M2_89
534.2
M2_90
509.9
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