A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
42.8
nTPM
Monaco:
272.9
nTPM
Schmiedel:
107.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.8
HPA sample
nTPM
Memory B-cell nTPM: 42.8
Samples: 6
Max nTPM: 51.2
Min nTPM: 31.6
P10809_1017
47.6
P10809_1025
46.9
P10809_1044
31.6
P10809_1063
41.0
P10809_1092
51.2
P10809_1105
38.3
Naive B-cell nTPM: 38.1
Samples: 6
Max nTPM: 96.6
Min nTPM: 19.7
P10809_1011
28.9
P10809_1029
30.1
P10809_1048
96.6
P10809_1067
19.7
P10809_1091
26.0
P10809_1104
27.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
272.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 137.5
Samples: 4
Max nTPM: 234.4
Min nTPM: 84.6
RHH5310_R3677
124.1
RHH5218_R3590
84.6
RHH5247_R3619
106.8
RHH5276_R3648
234.4
Naive B-cell nTPM: 109.4
Samples: 4
Max nTPM: 134.0
Min nTPM: 90.0
RHH5308_R3675
103.0
RHH5216_R3588
90.0
RHH5245_R3617
134.0
RHH5274_R3646
110.5
Non-switched memory B-cell nTPM: 150.8
Samples: 4
Max nTPM: 195.5
Min nTPM: 123.5
RHH5309_R3676
140.9
RHH5217_R3589
143.1
RHH5246_R3618
123.5
RHH5275_R3647
195.5
Plasmablast nTPM: 272.9
Samples: 4
Max nTPM: 358.2
Min nTPM: 214.9
RHH5312_R3679
214.9
RHH5220_R3592
270.7
RHH5249_R3621
358.2
RHH5278_R3650
247.8
Switched memory B-cell nTPM: 147.1
Samples: 4
Max nTPM: 203.3
Min nTPM: 114.4
RHH5311_R3678
114.4
RHH5219_R3591
149.0
RHH5248_R3620
121.7
RHH5277_R3649
203.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
107.0
Schmiedel sample id
TPM
Naive B-cell TPM: 107.0
Samples: 91
Max TPM: 145.1
Min TPM: 65.3
B_CELL_NAIVE_1
145.1
B_CELL_NAIVE_2
144.2
B_CELL_NAIVE_3
138.6
B_CELL_NAIVE_4
138.4
B_CELL_NAIVE_5
137.8
B_CELL_NAIVE_6
136.3
B_CELL_NAIVE_7
136.2
B_CELL_NAIVE_8
134.0
B_CELL_NAIVE_9
133.1
B_CELL_NAIVE_10
131.6
B_CELL_NAIVE_11
130.1
B_CELL_NAIVE_12
128.8
B_CELL_NAIVE_13
126.5
B_CELL_NAIVE_14
125.6
B_CELL_NAIVE_15
125.0
B_CELL_NAIVE_16
124.6
B_CELL_NAIVE_17
123.1
B_CELL_NAIVE_18
123.0
B_CELL_NAIVE_19
122.7
B_CELL_NAIVE_20
122.3
B_CELL_NAIVE_21
120.7
B_CELL_NAIVE_22
119.4
B_CELL_NAIVE_23
118.6
B_CELL_NAIVE_24
117.6
B_CELL_NAIVE_25
117.0
B_CELL_NAIVE_26
116.3
B_CELL_NAIVE_27
115.8
B_CELL_NAIVE_28
115.2
B_CELL_NAIVE_29
114.5
B_CELL_NAIVE_30
112.9
B_CELL_NAIVE_31
112.7
B_CELL_NAIVE_32
112.1
B_CELL_NAIVE_33
111.8
B_CELL_NAIVE_34
111.6
B_CELL_NAIVE_35
111.5
B_CELL_NAIVE_36
111.3
B_CELL_NAIVE_37
110.4
B_CELL_NAIVE_38
110.1
B_CELL_NAIVE_39
109.9
B_CELL_NAIVE_40
109.7
B_CELL_NAIVE_41
108.8
B_CELL_NAIVE_42
107.9
B_CELL_NAIVE_43
107.6
B_CELL_NAIVE_44
107.3
B_CELL_NAIVE_45
107.3
B_CELL_NAIVE_46
106.9
B_CELL_NAIVE_47
106.7
B_CELL_NAIVE_48
106.3
B_CELL_NAIVE_49
106.1
B_CELL_NAIVE_50
106.1
B_CELL_NAIVE_51
105.4
B_CELL_NAIVE_52
105.1
B_CELL_NAIVE_53
104.8
B_CELL_NAIVE_54
104.7
B_CELL_NAIVE_55
102.4
B_CELL_NAIVE_56
102.1
B_CELL_NAIVE_57
102.0
B_CELL_NAIVE_58
101.9
B_CELL_NAIVE_59
101.5
B_CELL_NAIVE_60
101.3
B_CELL_NAIVE_61
99.9
B_CELL_NAIVE_62
97.4
B_CELL_NAIVE_63
96.6
B_CELL_NAIVE_64
96.5
B_CELL_NAIVE_65
96.4
B_CELL_NAIVE_66
94.5
B_CELL_NAIVE_67
94.3
B_CELL_NAIVE_68
93.2
B_CELL_NAIVE_69
92.6
B_CELL_NAIVE_70
92.4
B_CELL_NAIVE_71
92.0
B_CELL_NAIVE_72
91.4
B_CELL_NAIVE_73
91.0
B_CELL_NAIVE_74
90.0
B_CELL_NAIVE_75
90.0
B_CELL_NAIVE_76
88.8
B_CELL_NAIVE_77
88.8
B_CELL_NAIVE_78
88.7
B_CELL_NAIVE_79
88.6
B_CELL_NAIVE_80
88.3
B_CELL_NAIVE_81
87.3
B_CELL_NAIVE_82
86.9
B_CELL_NAIVE_83
85.7
B_CELL_NAIVE_84
85.0
B_CELL_NAIVE_85
84.6
B_CELL_NAIVE_86
84.4
B_CELL_NAIVE_87
83.8
B_CELL_NAIVE_88
79.9
B_CELL_NAIVE_89
71.1
B_CELL_NAIVE_90
67.6
B_CELL_NAIVE_91
65.3
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