A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
21.2
nTPM
Monaco:
39.8
nTPM
Schmiedel:
45.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.2
HPA sample
nTPM
Memory B-cell nTPM: 11.6
Samples: 6
Max nTPM: 48.5
Min nTPM: 1.9
P10809_1017
3.3
P10809_1025
5.5
P10809_1044
48.5
P10809_1063
4.9
P10809_1092
5.3
P10809_1105
1.9
Naive B-cell nTPM: 21.2
Samples: 6
Max nTPM: 100.8
Min nTPM: 2.8
P10809_1011
3.4
P10809_1029
4.9
P10809_1048
100.8
P10809_1067
4.1
P10809_1091
11.3
P10809_1104
2.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 22.5
Samples: 4
Max nTPM: 38.3
Min nTPM: 15.2
RHH5310_R3677
15.2
RHH5218_R3590
21.0
RHH5247_R3619
15.3
RHH5276_R3648
38.3
Naive B-cell nTPM: 25.2
Samples: 4
Max nTPM: 34.5
Min nTPM: 17.8
RHH5308_R3675
29.4
RHH5216_R3588
17.8
RHH5245_R3617
19.1
RHH5274_R3646
34.5
Non-switched memory B-cell nTPM: 33.9
Samples: 4
Max nTPM: 49.9
Min nTPM: 14.1
RHH5309_R3676
14.1
RHH5217_R3589
49.9
RHH5246_R3618
21.5
RHH5275_R3647
49.9
Plasmablast nTPM: 32.0
Samples: 4
Max nTPM: 45.9
Min nTPM: 26.6
RHH5312_R3679
26.8
RHH5220_R3592
28.7
RHH5249_R3621
45.9
RHH5278_R3650
26.6
Switched memory B-cell nTPM: 39.9
Samples: 4
Max nTPM: 67.1
Min nTPM: 15.5
RHH5311_R3678
15.5
RHH5219_R3591
49.7
RHH5248_R3620
27.1
RHH5277_R3649
67.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.6
Schmiedel sample id
TPM
Naive B-cell TPM: 45.6
Samples: 91
Max TPM: 75.6
Min TPM: 24.4
B_CELL_NAIVE_1
75.6
B_CELL_NAIVE_2
71.9
B_CELL_NAIVE_3
66.7
B_CELL_NAIVE_4
63.3
B_CELL_NAIVE_5
59.7
B_CELL_NAIVE_6
59.0
B_CELL_NAIVE_7
58.7
B_CELL_NAIVE_8
58.2
B_CELL_NAIVE_9
58.0
B_CELL_NAIVE_10
57.0
B_CELL_NAIVE_11
55.7
B_CELL_NAIVE_12
55.5
B_CELL_NAIVE_13
55.3
B_CELL_NAIVE_14
54.0
B_CELL_NAIVE_15
53.7
B_CELL_NAIVE_16
52.9
B_CELL_NAIVE_17
52.8
B_CELL_NAIVE_18
52.4
B_CELL_NAIVE_19
52.4
B_CELL_NAIVE_20
51.6
B_CELL_NAIVE_21
51.5
B_CELL_NAIVE_22
51.4
B_CELL_NAIVE_23
51.1
B_CELL_NAIVE_24
50.8
B_CELL_NAIVE_25
50.5
B_CELL_NAIVE_26
50.2
B_CELL_NAIVE_27
50.0
B_CELL_NAIVE_28
49.1
B_CELL_NAIVE_29
49.1
B_CELL_NAIVE_30
48.3
B_CELL_NAIVE_31
48.1
B_CELL_NAIVE_32
47.7
B_CELL_NAIVE_33
47.7
B_CELL_NAIVE_34
47.6
B_CELL_NAIVE_35
47.6
B_CELL_NAIVE_36
47.5
B_CELL_NAIVE_37
47.4
B_CELL_NAIVE_38
47.3
B_CELL_NAIVE_39
46.9
B_CELL_NAIVE_40
46.8
B_CELL_NAIVE_41
46.4
B_CELL_NAIVE_42
46.4
B_CELL_NAIVE_43
46.2
B_CELL_NAIVE_44
45.6
B_CELL_NAIVE_45
45.4
B_CELL_NAIVE_46
45.2
B_CELL_NAIVE_47
45.0
B_CELL_NAIVE_48
44.7
B_CELL_NAIVE_49
44.2
B_CELL_NAIVE_50
44.1
B_CELL_NAIVE_51
44.1
B_CELL_NAIVE_52
43.9
B_CELL_NAIVE_53
43.9
B_CELL_NAIVE_54
43.1
B_CELL_NAIVE_55
43.1
B_CELL_NAIVE_56
43.0
B_CELL_NAIVE_57
42.7
B_CELL_NAIVE_58
42.5
B_CELL_NAIVE_59
42.5
B_CELL_NAIVE_60
42.4
B_CELL_NAIVE_61
42.0
B_CELL_NAIVE_62
41.9
B_CELL_NAIVE_63
41.6
B_CELL_NAIVE_64
41.5
B_CELL_NAIVE_65
40.7
B_CELL_NAIVE_66
39.2
B_CELL_NAIVE_67
38.9
B_CELL_NAIVE_68
38.9
B_CELL_NAIVE_69
38.5
B_CELL_NAIVE_70
38.4
B_CELL_NAIVE_71
38.1
B_CELL_NAIVE_72
37.9
B_CELL_NAIVE_73
37.2
B_CELL_NAIVE_74
36.7
B_CELL_NAIVE_75
36.1
B_CELL_NAIVE_76
35.8
B_CELL_NAIVE_77
35.8
B_CELL_NAIVE_78
35.2
B_CELL_NAIVE_79
35.0
B_CELL_NAIVE_80
35.0
B_CELL_NAIVE_81
34.7
B_CELL_NAIVE_82
34.7
B_CELL_NAIVE_83
34.4
B_CELL_NAIVE_84
34.1
B_CELL_NAIVE_85
33.9
B_CELL_NAIVE_86
33.4
B_CELL_NAIVE_87
33.3
B_CELL_NAIVE_88
32.8
B_CELL_NAIVE_89
32.6
B_CELL_NAIVE_90
31.0
B_CELL_NAIVE_91
24.4
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