A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.0
nTPM
Monaco:
39.7
nTPM
Schmiedel:
56.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.0
HPA sample
nTPM
Classical monocyte nTPM: 2.5
Samples: 6
Max nTPM: 7.6
Min nTPM: 1.1
P10809_1003
1.9
P10809_1020
1.1
P10809_1039
7.6
P10809_1058
1.5
P10809_1080
1.5
P10809_1107
1.4
Intermediate monocyte nTPM: 3.9
Samples: 6
Max nTPM: 5.8
Min nTPM: 2.0
P10809_1004
5.8
P10809_1023
4.4
P10809_1042
4.9
P10809_1061
4.1
P10809_1081
2.0
P10809_1108
2.5
Non-classical monocyte nTPM: 8.0
Samples: 5
Max nTPM: 15.0
Min nTPM: 4.7
P10809_1005
5.0
P10809_1053
4.7
P10809_1072
15.0
P10809_1082
6.4
P10809_1109
9.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.7
Monaco sample
nTPM
Classical monocyte nTPM: 21.0
Samples: 4
Max nTPM: 31.0
Min nTPM: 8.4
RHH5313_R3680
18.3
RHH5221_R3593
31.0
RHH5250_R3622
8.4
RHH5279_R3651
26.4
Intermediate monocyte nTPM: 26.5
Samples: 4
Max nTPM: 34.4
Min nTPM: 20.9
RHH5314_R3681
34.4
RHH5222_R3594
20.9
RHH5251_R3623
22.5
RHH5280_R3652
28.4
Non-classical monocyte nTPM: 39.7
Samples: 4
Max nTPM: 58.0
Min nTPM: 22.3
RHH5315_R3682
58.0
RHH5223_R3595
25.1
RHH5252_R3624
22.3
RHH5281_R3653
53.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
56.0
Schmiedel sample id
TPM
Classical monocyte TPM: 27.1
Samples: 91
Max TPM: 38.9
Min TPM: 15.5
MONOCYTES_1
38.9
MONOCYTES_2
38.7
MONOCYTES_3
38.4
MONOCYTES_4
37.9
MONOCYTES_5
36.4
MONOCYTES_6
35.8
MONOCYTES_7
35.3
MONOCYTES_8
33.7
MONOCYTES_9
33.7
MONOCYTES_10
33.5
MONOCYTES_11
33.3
MONOCYTES_12
33.2
MONOCYTES_13
32.7
MONOCYTES_14
32.3
MONOCYTES_15
32.0
MONOCYTES_16
31.8
MONOCYTES_17
31.2
MONOCYTES_18
31.1
MONOCYTES_19
31.0
MONOCYTES_20
30.8
MONOCYTES_21
30.6
MONOCYTES_22
30.4
MONOCYTES_23
30.1
MONOCYTES_24
30.0
MONOCYTES_25
30.0
MONOCYTES_26
29.9
MONOCYTES_27
29.4
MONOCYTES_28
29.2
MONOCYTES_29
29.2
MONOCYTES_30
29.1
MONOCYTES_31
29.0
MONOCYTES_32
28.8
MONOCYTES_33
28.5
MONOCYTES_34
28.1
MONOCYTES_35
28.0
MONOCYTES_36
27.9
MONOCYTES_37
27.7
MONOCYTES_38
27.4
MONOCYTES_39
27.3
MONOCYTES_40
27.2
MONOCYTES_41
27.1
MONOCYTES_42
27.1
MONOCYTES_43
27.0
MONOCYTES_44
26.8
MONOCYTES_45
26.7
MONOCYTES_46
26.7
MONOCYTES_47
26.6
MONOCYTES_48
26.5
MONOCYTES_49
26.4
MONOCYTES_50
26.4
MONOCYTES_51
26.4
MONOCYTES_52
26.3
MONOCYTES_53
26.2
MONOCYTES_54
26.2
MONOCYTES_55
25.5
MONOCYTES_56
25.4
MONOCYTES_57
25.4
MONOCYTES_58
25.2
MONOCYTES_59
25.2
MONOCYTES_60
25.1
MONOCYTES_61
25.1
MONOCYTES_62
25.1
MONOCYTES_63
24.8
MONOCYTES_64
24.4
MONOCYTES_65
24.4
MONOCYTES_66
24.2
MONOCYTES_67
24.2
MONOCYTES_68
24.0
MONOCYTES_69
23.9
MONOCYTES_70
23.2
MONOCYTES_71
23.1
MONOCYTES_72
22.9
MONOCYTES_73
22.6
MONOCYTES_74
22.5
MONOCYTES_75
22.2
MONOCYTES_76
22.2
MONOCYTES_77
22.0
MONOCYTES_78
21.8
MONOCYTES_79
21.8
MONOCYTES_80
21.7
MONOCYTES_81
21.7
MONOCYTES_82
21.5
MONOCYTES_83
21.1
MONOCYTES_84
20.9
MONOCYTES_85
20.7
MONOCYTES_86
20.3
MONOCYTES_87
19.2
MONOCYTES_88
17.7
MONOCYTES_89
17.7
MONOCYTES_90
15.7
MONOCYTES_91
15.5
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Non-classical monocyte TPM: 56.0
Samples: 90
Max TPM: 84.6
Min TPM: 35.5
M2_1
84.6
M2_2
78.8
M2_3
78.2
M2_4
75.1
M2_5
71.9
M2_6
71.9
M2_7
71.7
M2_8
71.5
M2_9
69.9
M2_10
69.5
M2_11
68.8
M2_12
68.3
M2_13
67.6
M2_14
67.3
M2_15
67.2
M2_16
65.0
M2_17
64.7
M2_18
64.7
M2_19
64.4
M2_20
64.4
M2_21
64.1
M2_22
63.4
M2_23
63.3
M2_24
62.9
M2_25
62.8
M2_26
62.6
M2_27
61.3
M2_28
61.2
M2_29
60.7
M2_30
60.5
M2_31
60.2
M2_32
59.9
M2_33
59.6
M2_34
59.2
M2_35
58.9
M2_36
58.8
M2_37
58.7
M2_38
58.7
M2_39
58.2
M2_40
58.1
M2_41
56.7
M2_42
56.5
M2_43
56.4
M2_44
56.2
M2_45
55.1
M2_46
54.8
M2_47
53.7
M2_48
53.6
M2_49
53.2
M2_50
53.1
M2_51
53.0
M2_52
52.8
M2_53
52.7
M2_54
52.4
M2_55
52.4
M2_56
52.1
M2_57
52.1
M2_58
51.9
M2_59
51.5
M2_60
51.3
M2_61
50.6
M2_62
49.9
M2_63
49.7
M2_64
49.2
M2_65
49.1
M2_66
48.8
M2_67
48.7
M2_68
47.9
M2_69
47.8
M2_70
47.6
M2_71
46.6
M2_72
46.6
M2_73
46.4
M2_74
46.0
M2_75
45.9
M2_76
45.2
M2_77
44.9
M2_78
44.7
M2_79
44.3
M2_80
44.1
M2_81
43.3
M2_82
43.2
M2_83
42.7
M2_84
41.8
M2_85
41.7
M2_86
41.2
M2_87
39.7
M2_88
37.9
M2_89
35.5
M2_90
35.5
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