A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.1
nTPM
Monaco:
34.9
nTPM
Schmiedel:
46.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.1
HPA sample
nTPM
NK-cell nTPM: 6.1
Samples: 6
Max nTPM: 7.9
Min nTPM: 4.5
P10809_1013
7.1
P10809_1033
4.5
P10809_1052
4.8
P10809_1071
7.9
P10809_1093
6.1
P10809_1103
6.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.9
Monaco sample
nTPM
NK-cell nTPM: 34.9
Samples: 4
Max nTPM: 43.7
Min nTPM: 27.2
RHH5316_R3683
27.2
RHH5224_R3596
31.5
RHH5253_R3625
43.7
RHH5282_R3654
37.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.1
Schmiedel sample id
TPM
NK-cell TPM: 46.1
Samples: 90
Max TPM: 87.7
Min TPM: 25.1
NK_1
87.7
NK_2
70.0
NK_3
67.6
NK_4
65.3
NK_5
61.7
NK_6
61.3
NK_7
60.7
NK_8
60.4
NK_9
59.7
NK_10
59.2
NK_11
59.0
NK_12
56.0
NK_13
56.0
NK_14
55.3
NK_15
54.3
NK_16
53.7
NK_17
53.1
NK_18
52.6
NK_19
52.5
NK_20
51.7
NK_21
50.7
NK_22
49.9
NK_23
49.8
NK_24
49.7
NK_25
49.4
NK_26
49.3
NK_27
49.3
NK_28
49.2
NK_29
49.0
NK_30
48.2
NK_31
48.0
NK_32
47.0
NK_33
46.7
NK_34
46.3
NK_35
46.3
NK_36
46.2
NK_37
46.1
NK_38
46.0
NK_39
45.4
NK_40
45.4
NK_41
44.8
NK_42
44.6
NK_43
44.6
NK_44
44.5
NK_45
44.5
NK_46
44.1
NK_47
44.0
NK_48
44.0
NK_49
43.9
NK_50
43.8
NK_51
43.7
NK_52
43.5
NK_53
42.8
NK_54
42.7
NK_55
42.5
NK_56
42.3
NK_57
42.1
NK_58
42.1
NK_59
42.1
NK_60
41.5
NK_61
41.1
NK_62
41.0
NK_63
41.0
NK_64
40.8
NK_65
40.7
NK_66
40.3
NK_67
40.0
NK_68
39.7
NK_69
39.5
NK_70
39.4
NK_71
39.4
NK_72
39.1
NK_73
39.1
NK_74
38.9
NK_75
38.7
NK_76
38.2
NK_77
38.2
NK_78
38.1
NK_79
37.8
NK_80
37.6
NK_81
37.2
NK_82
36.4
NK_83
36.4
NK_84
35.9
NK_85
35.7
NK_86
35.4
NK_87
33.4
NK_88
32.2
NK_89
31.8
NK_90
25.1
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