On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
356.3
nTPM
HPA Brain:
273.8
nTPM
GTEx:
356.3
nTPM
FANTOM5:
126.2
Scaled Tags Per Million
Macaque:
367.9
nTPM
Mouse:
250.9
nTPM
Rat:
201.3
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
74801
Sample
Intensity
Spinal cord_01
134163
Spinal cord_02
64800
Spinal cord_03
112596
Spinal cord_04
84802
Spinal cord_05
106388
Spinal cord_06
55792
Spinal cord_07
64176
Spinal cord_08
50258
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
273.8
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 268.3
2193
Male, age 75, both hemispheres
277.8
2819
Male, age 47, both hemispheres
272.9
2734
Male, age 80, both hemispheres
267.8
2818
Female, age 79, both hemispheres
254.7
Cervical spinal cord, central gray nTPM: 273.8
1981
Female, age 72, midline
356.5
2565
Male, age 75, midline
280.0
2816
Male, age 47, midline
245.7
2194
Female, age 79, both hemispheres
243.7
2048
Male, age 55, midline
242.8
Cervical spinal cord, dorsal horn nTPM: 258.6
2173
Female, age 72, unknown
348.8
2296
Male, age 66, both hemispheres
295.7
2069
Male, age 47, both hemispheres
276.4
2721
Male, age 90, both hemispheres
237.2
1877
Male, age 55, unknown
205.6
2297
Male, age 75, both hemispheres
187.7
Cervical spinal cord, ventral horn nTPM: 256.7
2098
Female, age 72, unknown
388.1
2809
Male, age 90, both hemispheres
286.3
2480
Male, age 75, both hemispheres
235.6
2295
Male, age 66, both hemispheres
228.6
2068
Male, age 55, unknown
216.5
2820
Female, age 79, both hemispheres
185.1
Dorsal funiculus (white matter) nTPM: 272.5
2064
Female, age 79, both hemispheres
295.5
2128
Male, age 75, both hemispheres
273.6
2812
Male, age 66, both hemispheres
272.9
2817
Male, age 47, both hemispheres
269.4
2810
Male, age 90, both hemispheres
251.2
Lateral funiculus (white matter) nTPM: 271.2
2094
Female, age 79, both hemispheres
303.4
2099
Male, age 90, both hemispheres
271.9
2192
Male, age 75, both hemispheres
257.9
2294
Male, age 66, both hemispheres
251.5
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
356.3
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 356.3
Samples: 204
Max nTPM: 621.0
Min nTPM: 209.1
Std nTPM: 79.9
Median nTPM: 345.1
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
621.0
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
603.2
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
580.0
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
548.3
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
546.3
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
545.6
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
525.2
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
523.7
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
501.4
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
487.7
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
485.6
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
482.6
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
480.5
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
479.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
479.0
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
476.9
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
476.4
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
472.4
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
469.2
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
464.7
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
459.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
457.1
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
456.1
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
455.7
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
451.6
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
449.6
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
447.9
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
447.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
446.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
445.8
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
443.9
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
442.8
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
442.3
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
435.3
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
434.3
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
431.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
431.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
430.0
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
429.0
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
424.9
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
423.1
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
422.8
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
422.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
416.9
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
416.6
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
414.7
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
414.2
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
413.6
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
411.6
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
410.6
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
410.4
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
407.7
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
406.9
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
405.5
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
404.9
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
402.7
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
401.0
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
400.5
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
400.1
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
400.1
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
399.9
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
399.8
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
399.6
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
396.6
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
393.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
392.4
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
388.7
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
387.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
386.8
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
382.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
381.6
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
381.2
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
381.2
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
380.0
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
378.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
378.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
377.9
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
377.6
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
377.4
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
376.1
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
373.4
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
372.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
369.7
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
369.7
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
367.8
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
362.6
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
357.6
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
357.4
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
357.4
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
357.3
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
355.0
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
354.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
354.2
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
353.1
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
352.2
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
352.0
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
352.0
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
351.4
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
349.0
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
347.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
345.9
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
345.1
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
345.1
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
344.9
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
343.1
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
342.0
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
341.9
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
339.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
339.1
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
338.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
336.6
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
336.5
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
335.4
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
335.1
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
333.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
333.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
332.5
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
332.5
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
331.9
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
331.7
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
330.2
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
328.2
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
327.2
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
324.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
323.7
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
323.5
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
321.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
321.3
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
318.9
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
317.8
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
317.3
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
316.4
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
316.2
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
315.6
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
315.5
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
314.8
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
314.6
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
313.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
313.8
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
310.9
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
308.2
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
308.1
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
307.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
305.8
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
304.8
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
303.5
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
302.9
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
301.7
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
301.0
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
299.6
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
297.8
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
296.7
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
296.3
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
293.6
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
293.6
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
293.1
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
292.9
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
289.5
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
287.5
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
286.8
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
286.6
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
286.0
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
285.6
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
283.0
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
281.2
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
280.5
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
279.5
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
278.4
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
278.0
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
276.4
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
275.7
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
272.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
272.0
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
270.4
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
270.0
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
268.6
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
267.1
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
266.3
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
265.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
265.4
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
262.8
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
258.5
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
256.6
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
256.4
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
255.9
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
255.0
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
253.5
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
251.0
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
249.1
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
248.9
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
248.0
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
247.9
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
245.9
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
243.9
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
243.7
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
239.3
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
239.1
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
238.6
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
238.2
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
229.5
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
229.5
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
229.4
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
225.1
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
209.1
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
367.9
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 201.0
Samples: 2
Max nTPM: 276.4
Min nTPM: 125.7
Sample A
125.7
Sample B
276.4
Ventral spinal cord nTPM: 367.9
Samples: 1
Max nTPM: 367.9
Min nTPM: 367.9
Sample A
367.9
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
250.9
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 1.3
Samples: 4
Max nTPM: 1.7
Min nTPM: 1.0
Sample A
1.7
Sample B
1.0
Sample C
1.3
Sample D
1.2
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
201.3
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 201.3
Samples: 4
Max nTPM: 215.3
Min nTPM: 187.5
Sample A
215.3
Sample A
187.5
Sample A
197.9
Sample A
204.4
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The Human Protein Atlas project is funded
