A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
511.5
nTPM
Monaco:
233.2
nTPM
Schmiedel:
37.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
511.5
HPA sample
nTPM
Memory B-cell nTPM: 511.5
Samples: 6
Max nTPM: 1209.2
Min nTPM: 278.6
P10809_1017
278.6
P10809_1025
394.0
P10809_1044
1209.2
P10809_1063
392.1
P10809_1092
397.2
P10809_1105
397.7
Naive B-cell nTPM: 478.8
Samples: 6
Max nTPM: 874.1
Min nTPM: 219.8
P10809_1011
219.8
P10809_1029
509.1
P10809_1048
874.1
P10809_1067
409.2
P10809_1091
431.9
P10809_1104
428.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
233.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 175.0
Samples: 4
Max nTPM: 261.0
Min nTPM: 63.9
RHH5310_R3677
145.1
RHH5218_R3590
63.9
RHH5247_R3619
261.0
RHH5276_R3648
230.0
Naive B-cell nTPM: 111.4
Samples: 4
Max nTPM: 156.1
Min nTPM: 84.3
RHH5308_R3675
156.1
RHH5216_R3588
84.3
RHH5245_R3617
112.4
RHH5274_R3646
92.8
Non-switched memory B-cell nTPM: 135.3
Samples: 4
Max nTPM: 177.1
Min nTPM: 79.5
RHH5309_R3676
152.2
RHH5217_R3589
79.5
RHH5246_R3618
132.4
RHH5275_R3647
177.1
Plasmablast nTPM: 233.2
Samples: 4
Max nTPM: 322.0
Min nTPM: 141.7
RHH5312_R3679
228.8
RHH5220_R3592
141.7
RHH5249_R3621
240.3
RHH5278_R3650
322.0
Switched memory B-cell nTPM: 92.7
Samples: 4
Max nTPM: 163.3
Min nTPM: 32.6
RHH5311_R3678
84.6
RHH5219_R3591
90.4
RHH5248_R3620
32.6
RHH5277_R3649
163.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.6
Schmiedel sample id
TPM
Naive B-cell TPM: 37.6
Samples: 91
Max TPM: 84.5
Min TPM: 5.6
B_CELL_NAIVE_1
84.5
B_CELL_NAIVE_2
77.2
B_CELL_NAIVE_3
73.4
B_CELL_NAIVE_4
67.6
B_CELL_NAIVE_5
67.0
B_CELL_NAIVE_6
66.6
B_CELL_NAIVE_7
65.9
B_CELL_NAIVE_8
63.1
B_CELL_NAIVE_9
58.8
B_CELL_NAIVE_10
54.7
B_CELL_NAIVE_11
53.7
B_CELL_NAIVE_12
52.9
B_CELL_NAIVE_13
52.7
B_CELL_NAIVE_14
52.0
B_CELL_NAIVE_15
51.1
B_CELL_NAIVE_16
50.9
B_CELL_NAIVE_17
50.6
B_CELL_NAIVE_18
50.3
B_CELL_NAIVE_19
50.0
B_CELL_NAIVE_20
49.7
B_CELL_NAIVE_21
49.4
B_CELL_NAIVE_22
49.4
B_CELL_NAIVE_23
49.1
B_CELL_NAIVE_24
48.6
B_CELL_NAIVE_25
47.9
B_CELL_NAIVE_26
46.5
B_CELL_NAIVE_27
46.5
B_CELL_NAIVE_28
45.9
B_CELL_NAIVE_29
45.7
B_CELL_NAIVE_30
45.6
B_CELL_NAIVE_31
45.5
B_CELL_NAIVE_32
45.3
B_CELL_NAIVE_33
45.3
B_CELL_NAIVE_34
44.9
B_CELL_NAIVE_35
44.8
B_CELL_NAIVE_36
44.3
B_CELL_NAIVE_37
43.8
B_CELL_NAIVE_38
43.7
B_CELL_NAIVE_39
43.4
B_CELL_NAIVE_40
43.2
B_CELL_NAIVE_41
43.1
B_CELL_NAIVE_42
42.4
B_CELL_NAIVE_43
40.6
B_CELL_NAIVE_44
40.5
B_CELL_NAIVE_45
40.0
B_CELL_NAIVE_46
39.9
B_CELL_NAIVE_47
39.3
B_CELL_NAIVE_48
38.7
B_CELL_NAIVE_49
38.4
B_CELL_NAIVE_50
38.0
B_CELL_NAIVE_51
37.5
B_CELL_NAIVE_52
34.6
B_CELL_NAIVE_53
34.1
B_CELL_NAIVE_54
34.0
B_CELL_NAIVE_55
32.4
B_CELL_NAIVE_56
32.2
B_CELL_NAIVE_57
32.2
B_CELL_NAIVE_58
30.7
B_CELL_NAIVE_59
30.4
B_CELL_NAIVE_60
30.2
B_CELL_NAIVE_61
30.0
B_CELL_NAIVE_62
29.6
B_CELL_NAIVE_63
28.4
B_CELL_NAIVE_64
27.7
B_CELL_NAIVE_65
27.3
B_CELL_NAIVE_66
27.0
B_CELL_NAIVE_67
26.5
B_CELL_NAIVE_68
25.5
B_CELL_NAIVE_69
25.4
B_CELL_NAIVE_70
22.0
B_CELL_NAIVE_71
21.7
B_CELL_NAIVE_72
21.4
B_CELL_NAIVE_73
21.2
B_CELL_NAIVE_74
20.8
B_CELL_NAIVE_75
20.8
B_CELL_NAIVE_76
20.0
B_CELL_NAIVE_77
19.3
B_CELL_NAIVE_78
17.0
B_CELL_NAIVE_79
16.4
B_CELL_NAIVE_80
16.4
B_CELL_NAIVE_81
15.8
B_CELL_NAIVE_82
15.1
B_CELL_NAIVE_83
14.6
B_CELL_NAIVE_84
13.7
B_CELL_NAIVE_85
13.6
B_CELL_NAIVE_86
12.1
B_CELL_NAIVE_87
9.5
B_CELL_NAIVE_88
6.7
B_CELL_NAIVE_89
6.4
B_CELL_NAIVE_90
5.9
B_CELL_NAIVE_91
5.6
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