A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1447.7
nTPM
Monaco:
188.8
nTPM
Schmiedel:
173.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1447.7
HPA sample
nTPM
NK-cell nTPM: 1447.7
Samples: 6
Max nTPM: 2539.2
Min nTPM: 502.3
P10809_1013
502.3
P10809_1033
2539.2
P10809_1052
1541.8
P10809_1071
1311.5
P10809_1093
1403.2
P10809_1103
1388.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
188.8
Monaco sample
nTPM
NK-cell nTPM: 188.8
Samples: 4
Max nTPM: 246.8
Min nTPM: 142.1
RHH5316_R3683
246.8
RHH5224_R3596
193.7
RHH5253_R3625
142.1
RHH5282_R3654
172.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
173.6
Schmiedel sample id
TPM
NK-cell TPM: 173.5
Samples: 90
Max TPM: 340.0
Min TPM: 39.1
NK_1
340.0
NK_2
306.9
NK_3
282.1
NK_4
281.2
NK_5
274.9
NK_6
274.1
NK_7
272.8
NK_8
272.4
NK_9
267.1
NK_10
258.9
NK_11
258.4
NK_12
257.1
NK_13
252.4
NK_14
252.0
NK_15
250.4
NK_16
250.0
NK_17
245.8
NK_18
241.1
NK_19
240.7
NK_20
237.9
NK_21
235.8
NK_22
233.0
NK_23
230.3
NK_24
228.5
NK_25
224.9
NK_26
222.3
NK_27
220.3
NK_28
215.2
NK_29
211.4
NK_30
209.3
NK_31
205.3
NK_32
204.0
NK_33
199.8
NK_34
198.6
NK_35
198.0
NK_36
194.9
NK_37
190.9
NK_38
186.5
NK_39
186.5
NK_40
182.0
NK_41
180.1
NK_42
178.4
NK_43
175.2
NK_44
175.0
NK_45
174.7
NK_46
172.3
NK_47
168.9
NK_48
166.7
NK_49
163.0
NK_50
163.0
NK_51
161.0
NK_52
160.1
NK_53
151.4
NK_54
151.0
NK_55
145.0
NK_56
143.6
NK_57
142.3
NK_58
141.2
NK_59
141.1
NK_60
138.0
NK_61
132.5
NK_62
131.3
NK_63
130.7
NK_64
130.4
NK_65
127.4
NK_66
122.6
NK_67
120.2
NK_68
118.5
NK_69
117.3
NK_70
116.8
NK_71
116.3
NK_72
114.2
NK_73
112.6
NK_74
107.1
NK_75
106.5
NK_76
100.1
NK_77
97.8
NK_78
96.4
NK_79
96.3
NK_80
94.0
NK_81
88.9
NK_82
85.9
NK_83
72.5
NK_84
71.0
NK_85
69.9
NK_86
66.6
NK_87
59.9
NK_88
47.3
NK_89
43.4
NK_90
39.1
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