A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3154.2
nTPM
Monaco:
548.6
nTPM
Schmiedel:
360.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3154.2
HPA sample
nTPM
Classical monocyte nTPM: 3154.2
Samples: 6
Max nTPM: 4069.2
Min nTPM: 2427.5
P10809_1003
3031.2
P10809_1020
3154.3
P10809_1039
4069.2
P10809_1058
2600.2
P10809_1080
2427.5
P10809_1107
3642.8
Intermediate monocyte nTPM: 2474.8
Samples: 6
Max nTPM: 3440.4
Min nTPM: 1383.5
P10809_1004
1383.5
P10809_1023
3365.0
P10809_1042
2818.9
P10809_1061
1845.7
P10809_1081
1995.5
P10809_1108
3440.4
Non-classical monocyte nTPM: 1616.3
Samples: 5
Max nTPM: 2376.8
Min nTPM: 1302.0
P10809_1005
1302.0
P10809_1053
1468.0
P10809_1072
1432.8
P10809_1082
1501.9
P10809_1109
2376.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
548.6
Monaco sample
nTPM
Classical monocyte nTPM: 390.5
Samples: 4
Max nTPM: 518.6
Min nTPM: 248.3
RHH5313_R3680
518.6
RHH5221_R3593
248.3
RHH5250_R3622
379.7
RHH5279_R3651
415.5
Intermediate monocyte nTPM: 548.6
Samples: 4
Max nTPM: 705.1
Min nTPM: 470.2
RHH5314_R3681
705.1
RHH5222_R3594
533.2
RHH5251_R3623
470.2
RHH5280_R3652
485.9
Non-classical monocyte nTPM: 372.2
Samples: 4
Max nTPM: 468.5
Min nTPM: 272.2
RHH5315_R3682
468.5
RHH5223_R3595
272.2
RHH5252_R3624
361.7
RHH5281_R3653
386.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
360.5
Schmiedel sample id
TPM
Classical monocyte TPM: 360.5
Samples: 91
Max TPM: 568.8
Min TPM: 169.1
MONOCYTES_1
568.8
MONOCYTES_2
559.5
MONOCYTES_3
522.4
MONOCYTES_4
515.4
MONOCYTES_5
509.3
MONOCYTES_6
500.5
MONOCYTES_7
486.7
MONOCYTES_8
485.7
MONOCYTES_9
481.7
MONOCYTES_10
479.0
MONOCYTES_11
478.7
MONOCYTES_12
478.3
MONOCYTES_13
476.5
MONOCYTES_14
474.4
MONOCYTES_15
471.0
MONOCYTES_16
469.3
MONOCYTES_17
466.6
MONOCYTES_18
462.4
MONOCYTES_19
462.0
MONOCYTES_20
458.3
MONOCYTES_21
454.4
MONOCYTES_22
448.3
MONOCYTES_23
438.5
MONOCYTES_24
437.8
MONOCYTES_25
434.8
MONOCYTES_26
434.4
MONOCYTES_27
432.7
MONOCYTES_28
430.4
MONOCYTES_29
421.0
MONOCYTES_30
412.1
MONOCYTES_31
409.3
MONOCYTES_32
408.2
MONOCYTES_33
405.8
MONOCYTES_34
404.2
MONOCYTES_35
403.4
MONOCYTES_36
395.6
MONOCYTES_37
394.7
MONOCYTES_38
392.6
MONOCYTES_39
389.6
MONOCYTES_40
389.2
MONOCYTES_41
385.9
MONOCYTES_42
382.9
MONOCYTES_43
370.6
MONOCYTES_44
363.6
MONOCYTES_45
359.6
MONOCYTES_46
359.5
MONOCYTES_47
355.6
MONOCYTES_48
353.0
MONOCYTES_49
345.9
MONOCYTES_50
342.5
MONOCYTES_51
338.3
MONOCYTES_52
335.0
MONOCYTES_53
330.7
MONOCYTES_54
329.6
MONOCYTES_55
328.3
MONOCYTES_56
326.2
MONOCYTES_57
320.5
MONOCYTES_58
317.4
MONOCYTES_59
315.3
MONOCYTES_60
315.3
MONOCYTES_61
315.2
MONOCYTES_62
306.7
MONOCYTES_63
306.2
MONOCYTES_64
305.5
MONOCYTES_65
302.5
MONOCYTES_66
302.3
MONOCYTES_67
298.5
MONOCYTES_68
296.0
MONOCYTES_69
293.0
MONOCYTES_70
287.1
MONOCYTES_71
279.7
MONOCYTES_72
277.7
MONOCYTES_73
272.3
MONOCYTES_74
270.1
MONOCYTES_75
263.2
MONOCYTES_76
256.5
MONOCYTES_77
250.6
MONOCYTES_78
244.0
MONOCYTES_79
243.4
MONOCYTES_80
242.3
MONOCYTES_81
235.3
MONOCYTES_82
211.0
MONOCYTES_83
208.0
MONOCYTES_84
201.4
MONOCYTES_85
200.3
MONOCYTES_86
195.9
MONOCYTES_87
193.4
MONOCYTES_88
191.3
MONOCYTES_89
188.9
MONOCYTES_90
177.3
MONOCYTES_91
169.1
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Non-classical monocyte TPM: 229.2
Samples: 90
Max TPM: 570.1
Min TPM: 30.8
M2_1
570.1
M2_2
481.0
M2_3
480.6
M2_4
476.7
M2_5
462.7
M2_6
453.6
M2_7
442.9
M2_8
429.2
M2_9
419.5
M2_10
407.8
M2_11
399.2
M2_12
395.0
M2_13
374.2
M2_14
367.9
M2_15
360.2
M2_16
349.0
M2_17
339.5
M2_18
337.6
M2_19
337.3
M2_20
320.5
M2_21
319.6
M2_22
313.7
M2_23
309.6
M2_24
308.0
M2_25
297.9
M2_26
270.7
M2_27
269.8
M2_28
267.6
M2_29
267.4
M2_30
267.2
M2_31
265.7
M2_32
265.0
M2_33
262.9
M2_34
261.4
M2_35
261.3
M2_36
259.7
M2_37
257.5
M2_38
247.8
M2_39
234.6
M2_40
233.2
M2_41
222.6
M2_42
222.4
M2_43
222.2
M2_44
221.0
M2_45
220.8
M2_46
215.6
M2_47
207.8
M2_48
206.1
M2_49
206.1
M2_50
203.4
M2_51
198.6
M2_52
197.3
M2_53
195.7
M2_54
195.5
M2_55
180.6
M2_56
179.8
M2_57
175.0
M2_58
161.6
M2_59
159.5
M2_60
159.1
M2_61
156.6
M2_62
151.1
M2_63
146.6
M2_64
134.6
M2_65
132.4
M2_66
130.6
M2_67
130.5
M2_68
128.4
M2_69
125.3
M2_70
120.8
M2_71
120.6
M2_72
118.3
M2_73
117.1
M2_74
109.9
M2_75
109.6
M2_76
108.4
M2_77
106.9
M2_78
104.6
M2_79
100.8
M2_80
96.2
M2_81
89.8
M2_82
78.6
M2_83
74.5
M2_84
62.5
M2_85
60.1
M2_86
57.4
M2_87
50.6
M2_88
43.2
M2_89
36.6
M2_90
30.8
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