A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.3
nTPM
Monaco:
36.5
nTPM
Schmiedel:
29.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.3
HPA sample
nTPM
Memory B-cell nTPM: 9.3
Samples: 6
Max nTPM: 12.0
Min nTPM: 6.5
P10809_1017
12.0
P10809_1025
7.2
P10809_1044
11.8
P10809_1063
6.5
P10809_1092
10.3
P10809_1105
8.0
Naive B-cell nTPM: 6.9
Samples: 6
Max nTPM: 7.7
Min nTPM: 6.2
P10809_1011
6.7
P10809_1029
6.9
P10809_1048
6.7
P10809_1067
7.2
P10809_1091
7.7
P10809_1104
6.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 29.5
Samples: 4
Max nTPM: 36.7
Min nTPM: 22.1
RHH5310_R3677
28.3
RHH5218_R3590
22.1
RHH5247_R3619
30.8
RHH5276_R3648
36.7
Naive B-cell nTPM: 23.3
Samples: 4
Max nTPM: 39.0
Min nTPM: 2.9
RHH5308_R3675
25.1
RHH5216_R3588
2.9
RHH5245_R3617
26.0
RHH5274_R3646
39.0
Non-switched memory B-cell nTPM: 30.4
Samples: 4
Max nTPM: 40.5
Min nTPM: 5.1
RHH5309_R3676
36.6
RHH5217_R3589
5.1
RHH5246_R3618
39.4
RHH5275_R3647
40.5
Plasmablast nTPM: 36.5
Samples: 4
Max nTPM: 46.7
Min nTPM: 23.1
RHH5312_R3679
23.1
RHH5220_R3592
39.7
RHH5249_R3621
36.6
RHH5278_R3650
46.7
Switched memory B-cell nTPM: 20.5
Samples: 4
Max nTPM: 38.8
Min nTPM: 2.7
RHH5311_R3678
8.3
RHH5219_R3591
32.2
RHH5248_R3620
2.7
RHH5277_R3649
38.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.0
Schmiedel sample id
TPM
Naive B-cell TPM: 29.0
Samples: 91
Max TPM: 36.1
Min TPM: 18.7
B_CELL_NAIVE_1
36.1
B_CELL_NAIVE_2
34.9
B_CELL_NAIVE_3
34.5
B_CELL_NAIVE_4
34.1
B_CELL_NAIVE_5
33.9
B_CELL_NAIVE_6
33.9
B_CELL_NAIVE_7
33.7
B_CELL_NAIVE_8
33.3
B_CELL_NAIVE_9
33.1
B_CELL_NAIVE_10
33.1
B_CELL_NAIVE_11
33.0
B_CELL_NAIVE_12
32.6
B_CELL_NAIVE_13
32.6
B_CELL_NAIVE_14
32.6
B_CELL_NAIVE_15
32.3
B_CELL_NAIVE_16
32.3
B_CELL_NAIVE_17
32.2
B_CELL_NAIVE_18
32.2
B_CELL_NAIVE_19
32.2
B_CELL_NAIVE_20
32.0
B_CELL_NAIVE_21
32.0
B_CELL_NAIVE_22
31.9
B_CELL_NAIVE_23
31.8
B_CELL_NAIVE_24
31.7
B_CELL_NAIVE_25
31.7
B_CELL_NAIVE_26
31.5
B_CELL_NAIVE_27
31.5
B_CELL_NAIVE_28
31.2
B_CELL_NAIVE_29
31.1
B_CELL_NAIVE_30
31.0
B_CELL_NAIVE_31
30.6
B_CELL_NAIVE_32
30.6
B_CELL_NAIVE_33
30.5
B_CELL_NAIVE_34
30.4
B_CELL_NAIVE_35
30.4
B_CELL_NAIVE_36
30.3
B_CELL_NAIVE_37
30.3
B_CELL_NAIVE_38
30.3
B_CELL_NAIVE_39
30.2
B_CELL_NAIVE_40
30.2
B_CELL_NAIVE_41
30.1
B_CELL_NAIVE_42
30.1
B_CELL_NAIVE_43
30.1
B_CELL_NAIVE_44
30.0
B_CELL_NAIVE_45
30.0
B_CELL_NAIVE_46
29.9
B_CELL_NAIVE_47
29.9
B_CELL_NAIVE_48
29.8
B_CELL_NAIVE_49
29.6
B_CELL_NAIVE_50
29.4
B_CELL_NAIVE_51
29.3
B_CELL_NAIVE_52
29.1
B_CELL_NAIVE_53
28.9
B_CELL_NAIVE_54
28.9
B_CELL_NAIVE_55
28.9
B_CELL_NAIVE_56
28.7
B_CELL_NAIVE_57
28.5
B_CELL_NAIVE_58
28.4
B_CELL_NAIVE_59
28.0
B_CELL_NAIVE_60
27.7
B_CELL_NAIVE_61
27.6
B_CELL_NAIVE_62
27.5
B_CELL_NAIVE_63
27.5
B_CELL_NAIVE_64
27.2
B_CELL_NAIVE_65
27.1
B_CELL_NAIVE_66
27.1
B_CELL_NAIVE_67
27.0
B_CELL_NAIVE_68
26.6
B_CELL_NAIVE_69
26.6
B_CELL_NAIVE_70
26.3
B_CELL_NAIVE_71
26.3
B_CELL_NAIVE_72
26.3
B_CELL_NAIVE_73
26.0
B_CELL_NAIVE_74
25.7
B_CELL_NAIVE_75
25.6
B_CELL_NAIVE_76
25.4
B_CELL_NAIVE_77
25.4
B_CELL_NAIVE_78
25.3
B_CELL_NAIVE_79
24.4
B_CELL_NAIVE_80
24.4
B_CELL_NAIVE_81
24.3
B_CELL_NAIVE_82
24.3
B_CELL_NAIVE_83
24.2
B_CELL_NAIVE_84
23.9
B_CELL_NAIVE_85
23.4
B_CELL_NAIVE_86
23.4
B_CELL_NAIVE_87
22.9
B_CELL_NAIVE_88
22.3
B_CELL_NAIVE_89
21.3
B_CELL_NAIVE_90
19.8
B_CELL_NAIVE_91
18.7
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The Human Protein Atlas project is funded
