A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
22.8
nTPM
Monaco:
76.4
nTPM
Schmiedel:
58.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.8
HPA sample
nTPM
Classical monocyte nTPM: 15.2
Samples: 6
Max nTPM: 20.2
Min nTPM: 11.6
P10809_1003
20.2
P10809_1020
17.0
P10809_1039
15.0
P10809_1058
12.4
P10809_1080
14.9
P10809_1107
11.6
Intermediate monocyte nTPM: 16.8
Samples: 6
Max nTPM: 20.7
Min nTPM: 14.9
P10809_1004
20.7
P10809_1023
16.2
P10809_1042
16.4
P10809_1061
16.1
P10809_1081
14.9
P10809_1108
16.5
Non-classical monocyte nTPM: 22.8
Samples: 5
Max nTPM: 38.8
Min nTPM: 13.4
P10809_1005
24.4
P10809_1053
19.3
P10809_1072
38.8
P10809_1082
13.4
P10809_1109
18.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
76.4
Monaco sample
nTPM
Classical monocyte nTPM: 70.8
Samples: 4
Max nTPM: 85.1
Min nTPM: 63.8
RHH5313_R3680
64.6
RHH5221_R3593
85.1
RHH5250_R3622
69.7
RHH5279_R3651
63.8
Intermediate monocyte nTPM: 65.6
Samples: 4
Max nTPM: 91.4
Min nTPM: 24.5
RHH5314_R3681
63.9
RHH5222_R3594
91.4
RHH5251_R3623
82.5
RHH5280_R3652
24.5
Non-classical monocyte nTPM: 76.4
Samples: 4
Max nTPM: 99.8
Min nTPM: 51.1
RHH5315_R3682
83.4
RHH5223_R3595
99.8
RHH5252_R3624
71.2
RHH5281_R3653
51.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.7
Schmiedel sample id
TPM
Classical monocyte TPM: 40.5
Samples: 91
Max TPM: 51.3
Min TPM: 29.9
MONOCYTES_1
51.3
MONOCYTES_2
49.9
MONOCYTES_3
48.6
MONOCYTES_4
47.9
MONOCYTES_5
47.5
MONOCYTES_6
47.4
MONOCYTES_7
47.3
MONOCYTES_8
46.5
MONOCYTES_9
46.1
MONOCYTES_10
46.1
MONOCYTES_11
46.0
MONOCYTES_12
45.9
MONOCYTES_13
45.3
MONOCYTES_14
45.2
MONOCYTES_15
44.5
MONOCYTES_16
43.9
MONOCYTES_17
43.8
MONOCYTES_18
43.8
MONOCYTES_19
43.6
MONOCYTES_20
43.4
MONOCYTES_21
43.3
MONOCYTES_22
43.3
MONOCYTES_23
43.2
MONOCYTES_24
43.2
MONOCYTES_25
42.9
MONOCYTES_26
42.8
MONOCYTES_27
42.7
MONOCYTES_28
42.7
MONOCYTES_29
42.6
MONOCYTES_30
42.5
MONOCYTES_31
42.4
MONOCYTES_32
41.7
MONOCYTES_33
41.7
MONOCYTES_34
41.6
MONOCYTES_35
41.5
MONOCYTES_36
41.5
MONOCYTES_37
41.4
MONOCYTES_38
41.3
MONOCYTES_39
41.2
MONOCYTES_40
41.1
MONOCYTES_41
40.9
MONOCYTES_42
40.9
MONOCYTES_43
40.8
MONOCYTES_44
40.8
MONOCYTES_45
40.8
MONOCYTES_46
40.5
MONOCYTES_47
40.4
MONOCYTES_48
40.4
MONOCYTES_49
40.3
MONOCYTES_50
40.1
MONOCYTES_51
40.0
MONOCYTES_52
39.8
MONOCYTES_53
39.8
MONOCYTES_54
39.7
MONOCYTES_55
39.7
MONOCYTES_56
39.7
MONOCYTES_57
39.6
MONOCYTES_58
39.5
MONOCYTES_59
39.4
MONOCYTES_60
39.4
MONOCYTES_61
39.4
MONOCYTES_62
39.3
MONOCYTES_63
39.3
MONOCYTES_64
39.2
MONOCYTES_65
39.1
MONOCYTES_66
39.0
MONOCYTES_67
38.0
MONOCYTES_68
37.7
MONOCYTES_69
37.6
MONOCYTES_70
37.6
MONOCYTES_71
37.4
MONOCYTES_72
37.2
MONOCYTES_73
37.2
MONOCYTES_74
36.8
MONOCYTES_75
36.6
MONOCYTES_76
36.4
MONOCYTES_77
36.1
MONOCYTES_78
35.6
MONOCYTES_79
35.4
MONOCYTES_80
34.7
MONOCYTES_81
34.7
MONOCYTES_82
34.5
MONOCYTES_83
34.4
MONOCYTES_84
34.2
MONOCYTES_85
34.0
MONOCYTES_86
33.5
MONOCYTES_87
32.8
MONOCYTES_88
32.8
MONOCYTES_89
31.3
MONOCYTES_90
30.6
MONOCYTES_91
29.9
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Non-classical monocyte TPM: 58.7
Samples: 90
Max TPM: 76.2
Min TPM: 45.8
M2_1
76.2
M2_2
71.1
M2_3
70.9
M2_4
70.5
M2_5
70.0
M2_6
68.4
M2_7
67.7
M2_8
67.0
M2_9
66.0
M2_10
65.5
M2_11
65.4
M2_12
65.2
M2_13
65.1
M2_14
65.1
M2_15
65.1
M2_16
64.6
M2_17
64.3
M2_18
64.2
M2_19
64.1
M2_20
63.7
M2_21
63.7
M2_22
63.3
M2_23
62.9
M2_24
62.7
M2_25
62.6
M2_26
62.3
M2_27
62.0
M2_28
62.0
M2_29
61.7
M2_30
61.6
M2_31
61.5
M2_32
61.0
M2_33
60.8
M2_34
60.5
M2_35
60.2
M2_36
60.2
M2_37
60.1
M2_38
59.3
M2_39
59.1
M2_40
59.0
M2_41
58.9
M2_42
58.8
M2_43
58.6
M2_44
58.3
M2_45
58.2
M2_46
58.2
M2_47
58.0
M2_48
58.0
M2_49
57.7
M2_50
57.6
M2_51
57.2
M2_52
56.8
M2_53
56.4
M2_54
56.3
M2_55
56.1
M2_56
55.9
M2_57
55.9
M2_58
55.7
M2_59
55.6
M2_60
55.5
M2_61
55.4
M2_62
55.3
M2_63
55.1
M2_64
55.1
M2_65
55.1
M2_66
55.1
M2_67
55.0
M2_68
54.4
M2_69
54.4
M2_70
54.3
M2_71
54.3
M2_72
53.9
M2_73
53.8
M2_74
53.6
M2_75
53.5
M2_76
53.2
M2_77
53.0
M2_78
52.7
M2_79
52.6
M2_80
52.3
M2_81
51.9
M2_82
51.4
M2_83
50.9
M2_84
50.6
M2_85
50.1
M2_86
49.5
M2_87
48.0
M2_88
47.2
M2_89
46.4
M2_90
45.8
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