A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
20.0
nTPM
Monaco:
62.6
nTPM
Schmiedel:
68.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.0
HPA sample
nTPM
NK-cell nTPM: 19.9
Samples: 6
Max nTPM: 29.1
Min nTPM: 11.9
P10809_1013
18.7
P10809_1033
21.5
P10809_1052
22.7
P10809_1071
29.1
P10809_1093
15.7
P10809_1103
11.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
62.6
Monaco sample
nTPM
NK-cell nTPM: 62.6
Samples: 4
Max nTPM: 80.3
Min nTPM: 23.4
RHH5316_R3683
71.4
RHH5224_R3596
23.4
RHH5253_R3625
75.2
RHH5282_R3654
80.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
68.6
Schmiedel sample id
TPM
NK-cell TPM: 68.6
Samples: 90
Max TPM: 92.2
Min TPM: 51.0
NK_1
92.2
NK_2
88.5
NK_3
83.2
NK_4
82.4
NK_5
79.2
NK_6
79.2
NK_7
79.1
NK_8
78.6
NK_9
78.4
NK_10
77.9
NK_11
77.7
NK_12
77.3
NK_13
77.2
NK_14
77.2
NK_15
76.7
NK_16
76.6
NK_17
75.9
NK_18
74.8
NK_19
74.5
NK_20
74.2
NK_21
74.0
NK_22
73.9
NK_23
73.9
NK_24
73.4
NK_25
72.6
NK_26
72.3
NK_27
72.0
NK_28
72.0
NK_29
71.9
NK_30
71.8
NK_31
71.7
NK_32
71.5
NK_33
71.2
NK_34
71.1
NK_35
71.0
NK_36
70.9
NK_37
70.5
NK_38
70.1
NK_39
69.9
NK_40
69.6
NK_41
69.4
NK_42
69.3
NK_43
69.0
NK_44
68.9
NK_45
68.9
NK_46
68.9
NK_47
68.9
NK_48
68.8
NK_49
68.6
NK_50
67.2
NK_51
66.7
NK_52
66.5
NK_53
66.4
NK_54
66.3
NK_55
66.1
NK_56
66.1
NK_57
66.0
NK_58
65.9
NK_59
65.8
NK_60
65.1
NK_61
65.0
NK_62
64.8
NK_63
64.7
NK_64
64.4
NK_65
64.1
NK_66
64.0
NK_67
63.8
NK_68
63.6
NK_69
63.1
NK_70
62.6
NK_71
62.6
NK_72
62.1
NK_73
61.7
NK_74
61.5
NK_75
61.4
NK_76
61.1
NK_77
61.1
NK_78
61.1
NK_79
60.3
NK_80
59.1
NK_81
58.3
NK_82
57.9
NK_83
57.9
NK_84
57.5
NK_85
57.2
NK_86
56.9
NK_87
55.3
NK_88
54.8
NK_89
52.1
NK_90
51.0
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