A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
14.1
nTPM
Monaco:
101.1
nTPM
Schmiedel:
66.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.1
HPA sample
nTPM
Memory B-cell nTPM: 14.1
Samples: 6
Max nTPM: 21.7
Min nTPM: 1.4
P10809_1017
14.5
P10809_1025
17.1
P10809_1044
1.4
P10809_1063
20.5
P10809_1092
21.7
P10809_1105
9.6
Naive B-cell nTPM: 11.7
Samples: 6
Max nTPM: 19.4
Min nTPM: 7.3
P10809_1011
9.2
P10809_1029
7.8
P10809_1048
11.6
P10809_1067
15.0
P10809_1091
19.4
P10809_1104
7.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
101.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 62.3
Samples: 4
Max nTPM: 82.4
Min nTPM: 44.7
RHH5310_R3677
44.7
RHH5218_R3590
82.4
RHH5247_R3619
61.5
RHH5276_R3648
60.7
Naive B-cell nTPM: 55.3
Samples: 4
Max nTPM: 93.5
Min nTPM: 39.5
RHH5308_R3675
39.5
RHH5216_R3588
93.5
RHH5245_R3617
46.3
RHH5274_R3646
41.8
Non-switched memory B-cell nTPM: 101.1
Samples: 4
Max nTPM: 164.2
Min nTPM: 76.4
RHH5309_R3676
76.4
RHH5217_R3589
164.2
RHH5246_R3618
85.1
RHH5275_R3647
78.6
Plasmablast nTPM: 41.7
Samples: 4
Max nTPM: 48.7
Min nTPM: 27.5
RHH5312_R3679
44.6
RHH5220_R3592
46.0
RHH5249_R3621
27.5
RHH5278_R3650
48.7
Switched memory B-cell nTPM: 73.7
Samples: 4
Max nTPM: 96.7
Min nTPM: 54.8
RHH5311_R3678
75.3
RHH5219_R3591
96.7
RHH5248_R3620
68.1
RHH5277_R3649
54.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
66.4
Schmiedel sample id
TPM
Naive B-cell TPM: 66.4
Samples: 91
Max TPM: 109.7
Min TPM: 47.7
B_CELL_NAIVE_1
109.7
B_CELL_NAIVE_2
101.8
B_CELL_NAIVE_3
97.7
B_CELL_NAIVE_4
93.6
B_CELL_NAIVE_5
89.5
B_CELL_NAIVE_6
88.6
B_CELL_NAIVE_7
83.2
B_CELL_NAIVE_8
82.8
B_CELL_NAIVE_9
82.0
B_CELL_NAIVE_10
81.2
B_CELL_NAIVE_11
80.9
B_CELL_NAIVE_12
80.6
B_CELL_NAIVE_13
79.4
B_CELL_NAIVE_14
78.4
B_CELL_NAIVE_15
78.1
B_CELL_NAIVE_16
77.6
B_CELL_NAIVE_17
77.4
B_CELL_NAIVE_18
76.1
B_CELL_NAIVE_19
74.9
B_CELL_NAIVE_20
73.8
B_CELL_NAIVE_21
73.6
B_CELL_NAIVE_22
73.2
B_CELL_NAIVE_23
72.9
B_CELL_NAIVE_24
72.9
B_CELL_NAIVE_25
72.1
B_CELL_NAIVE_26
71.8
B_CELL_NAIVE_27
71.2
B_CELL_NAIVE_28
70.0
B_CELL_NAIVE_29
70.0
B_CELL_NAIVE_30
69.5
B_CELL_NAIVE_31
69.2
B_CELL_NAIVE_32
68.7
B_CELL_NAIVE_33
68.6
B_CELL_NAIVE_34
67.6
B_CELL_NAIVE_35
66.7
B_CELL_NAIVE_36
66.7
B_CELL_NAIVE_37
66.6
B_CELL_NAIVE_38
66.0
B_CELL_NAIVE_39
65.7
B_CELL_NAIVE_40
65.2
B_CELL_NAIVE_41
65.0
B_CELL_NAIVE_42
64.9
B_CELL_NAIVE_43
64.4
B_CELL_NAIVE_44
64.3
B_CELL_NAIVE_45
63.8
B_CELL_NAIVE_46
63.5
B_CELL_NAIVE_47
63.2
B_CELL_NAIVE_48
62.8
B_CELL_NAIVE_49
62.8
B_CELL_NAIVE_50
62.7
B_CELL_NAIVE_51
62.6
B_CELL_NAIVE_52
62.6
B_CELL_NAIVE_53
61.9
B_CELL_NAIVE_54
61.7
B_CELL_NAIVE_55
61.1
B_CELL_NAIVE_56
61.0
B_CELL_NAIVE_57
60.9
B_CELL_NAIVE_58
60.7
B_CELL_NAIVE_59
60.5
B_CELL_NAIVE_60
60.2
B_CELL_NAIVE_61
60.1
B_CELL_NAIVE_62
59.7
B_CELL_NAIVE_63
59.7
B_CELL_NAIVE_64
59.1
B_CELL_NAIVE_65
58.6
B_CELL_NAIVE_66
58.6
B_CELL_NAIVE_67
58.5
B_CELL_NAIVE_68
57.8
B_CELL_NAIVE_69
57.7
B_CELL_NAIVE_70
57.6
B_CELL_NAIVE_71
57.5
B_CELL_NAIVE_72
57.0
B_CELL_NAIVE_73
56.7
B_CELL_NAIVE_74
56.5
B_CELL_NAIVE_75
56.3
B_CELL_NAIVE_76
55.8
B_CELL_NAIVE_77
55.8
B_CELL_NAIVE_78
55.8
B_CELL_NAIVE_79
55.5
B_CELL_NAIVE_80
55.4
B_CELL_NAIVE_81
53.6
B_CELL_NAIVE_82
53.6
B_CELL_NAIVE_83
53.5
B_CELL_NAIVE_84
53.3
B_CELL_NAIVE_85
52.7
B_CELL_NAIVE_86
52.2
B_CELL_NAIVE_87
51.8
B_CELL_NAIVE_88
51.4
B_CELL_NAIVE_89
49.7
B_CELL_NAIVE_90
49.1
B_CELL_NAIVE_91
47.7
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The Human Protein Atlas project is funded
