A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
29.1
nTPM
Monaco:
139.0
nTPM
Schmiedel:
139.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.1
HPA sample
nTPM
Classical monocyte nTPM: 21.5
Samples: 6
Max nTPM: 28.3
Min nTPM: 14.4
P10809_1003
28.3
P10809_1020
20.9
P10809_1039
22.4
P10809_1058
18.4
P10809_1080
24.7
P10809_1107
14.4
Intermediate monocyte nTPM: 29.0
Samples: 6
Max nTPM: 34.8
Min nTPM: 18.4
P10809_1004
29.3
P10809_1023
28.7
P10809_1042
34.8
P10809_1061
33.7
P10809_1081
29.3
P10809_1108
18.4
Non-classical monocyte nTPM: 25.8
Samples: 5
Max nTPM: 34.4
Min nTPM: 17.2
P10809_1005
25.3
P10809_1053
32.7
P10809_1072
34.4
P10809_1082
19.6
P10809_1109
17.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
139.0
Monaco sample
nTPM
Classical monocyte nTPM: 108.3
Samples: 4
Max nTPM: 159.2
Min nTPM: 89.6
RHH5313_R3680
89.9
RHH5221_R3593
159.2
RHH5250_R3622
94.4
RHH5279_R3651
89.6
Intermediate monocyte nTPM: 119.6
Samples: 4
Max nTPM: 196.9
Min nTPM: 65.7
RHH5314_R3681
98.8
RHH5222_R3594
196.9
RHH5251_R3623
65.7
RHH5280_R3652
116.9
Non-classical monocyte nTPM: 139.0
Samples: 4
Max nTPM: 210.7
Min nTPM: 110.4
RHH5315_R3682
110.4
RHH5223_R3595
210.7
RHH5252_R3624
114.5
RHH5281_R3653
120.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
139.6
Schmiedel sample id
TPM
Classical monocyte TPM: 83.2
Samples: 91
Max TPM: 114.5
Min TPM: 60.0
MONOCYTES_1
114.5
MONOCYTES_2
106.2
MONOCYTES_3
102.2
MONOCYTES_4
102.1
MONOCYTES_5
101.4
MONOCYTES_6
100.3
MONOCYTES_7
100.0
MONOCYTES_8
99.5
MONOCYTES_9
96.4
MONOCYTES_10
96.3
MONOCYTES_11
95.7
MONOCYTES_12
95.4
MONOCYTES_13
95.2
MONOCYTES_14
95.1
MONOCYTES_15
94.7
MONOCYTES_16
94.3
MONOCYTES_17
94.0
MONOCYTES_18
92.6
MONOCYTES_19
92.3
MONOCYTES_20
92.2
MONOCYTES_21
92.1
MONOCYTES_22
91.6
MONOCYTES_23
91.4
MONOCYTES_24
90.9
MONOCYTES_25
90.2
MONOCYTES_26
90.1
MONOCYTES_27
89.6
MONOCYTES_28
89.6
MONOCYTES_29
88.9
MONOCYTES_30
88.6
MONOCYTES_31
88.1
MONOCYTES_32
88.0
MONOCYTES_33
87.6
MONOCYTES_34
87.3
MONOCYTES_35
86.9
MONOCYTES_36
85.8
MONOCYTES_37
85.2
MONOCYTES_38
85.0
MONOCYTES_39
84.9
MONOCYTES_40
84.8
MONOCYTES_41
84.7
MONOCYTES_42
84.3
MONOCYTES_43
83.4
MONOCYTES_44
82.2
MONOCYTES_45
82.2
MONOCYTES_46
82.1
MONOCYTES_47
82.1
MONOCYTES_48
81.5
MONOCYTES_49
81.4
MONOCYTES_50
81.2
MONOCYTES_51
80.6
MONOCYTES_52
80.1
MONOCYTES_53
79.8
MONOCYTES_54
79.5
MONOCYTES_55
79.2
MONOCYTES_56
79.1
MONOCYTES_57
79.0
MONOCYTES_58
78.5
MONOCYTES_59
78.5
MONOCYTES_60
78.4
MONOCYTES_61
78.3
MONOCYTES_62
77.9
MONOCYTES_63
77.5
MONOCYTES_64
77.2
MONOCYTES_65
77.1
MONOCYTES_66
75.0
MONOCYTES_67
74.9
MONOCYTES_68
74.8
MONOCYTES_69
74.4
MONOCYTES_70
74.3
MONOCYTES_71
74.3
MONOCYTES_72
74.0
MONOCYTES_73
73.3
MONOCYTES_74
72.8
MONOCYTES_75
72.8
MONOCYTES_76
72.4
MONOCYTES_77
72.0
MONOCYTES_78
71.6
MONOCYTES_79
71.3
MONOCYTES_80
70.5
MONOCYTES_81
70.4
MONOCYTES_82
70.4
MONOCYTES_83
70.3
MONOCYTES_84
70.0
MONOCYTES_85
69.1
MONOCYTES_86
68.1
MONOCYTES_87
67.0
MONOCYTES_88
66.5
MONOCYTES_89
65.2
MONOCYTES_90
60.9
MONOCYTES_91
60.0
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Non-classical monocyte TPM: 139.6
Samples: 90
Max TPM: 201.2
Min TPM: 86.1
M2_1
201.2
M2_2
198.8
M2_3
194.4
M2_4
186.6
M2_5
184.7
M2_6
182.3
M2_7
172.0
M2_8
171.0
M2_9
168.7
M2_10
167.7
M2_11
166.9
M2_12
166.9
M2_13
164.9
M2_14
159.6
M2_15
159.3
M2_16
158.8
M2_17
157.6
M2_18
154.4
M2_19
154.1
M2_20
153.6
M2_21
152.1
M2_22
152.1
M2_23
150.5
M2_24
150.3
M2_25
150.0
M2_26
149.2
M2_27
149.1
M2_28
148.1
M2_29
147.6
M2_30
145.5
M2_31
145.0
M2_32
144.5
M2_33
144.5
M2_34
144.0
M2_35
143.9
M2_36
143.2
M2_37
140.6
M2_38
140.5
M2_39
139.6
M2_40
139.5
M2_41
139.5
M2_42
139.2
M2_43
137.8
M2_44
136.6
M2_45
135.9
M2_46
135.9
M2_47
135.1
M2_48
134.7
M2_49
134.4
M2_50
133.4
M2_51
133.0
M2_52
133.0
M2_53
133.0
M2_54
132.8
M2_55
132.0
M2_56
131.8
M2_57
131.7
M2_58
131.5
M2_59
130.5
M2_60
130.3
M2_61
130.2
M2_62
129.7
M2_63
129.4
M2_64
129.0
M2_65
127.3
M2_66
126.5
M2_67
126.2
M2_68
125.8
M2_69
124.7
M2_70
122.9
M2_71
122.6
M2_72
122.5
M2_73
121.0
M2_74
120.7
M2_75
120.0
M2_76
119.1
M2_77
118.6
M2_78
114.8
M2_79
114.5
M2_80
114.3
M2_81
114.1
M2_82
113.6
M2_83
112.7
M2_84
111.9
M2_85
110.3
M2_86
109.4
M2_87
109.0
M2_88
106.7
M2_89
102.9
M2_90
86.1
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