A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
24.0
nTPM
Monaco:
82.4
nTPM
Schmiedel:
95.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.0
HPA sample
nTPM
NK-cell nTPM: 24.1
Samples: 6
Max nTPM: 35.2
Min nTPM: 11.3
P10809_1013
21.6
P10809_1033
26.6
P10809_1052
35.2
P10809_1071
18.5
P10809_1093
11.3
P10809_1103
31.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
82.4
Monaco sample
nTPM
NK-cell nTPM: 82.4
Samples: 4
Max nTPM: 112.1
Min nTPM: 63.0
RHH5316_R3683
71.0
RHH5224_R3596
112.1
RHH5253_R3625
63.0
RHH5282_R3654
83.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
95.6
Schmiedel sample id
TPM
NK-cell TPM: 95.6
Samples: 90
Max TPM: 159.9
Min TPM: 66.7
NK_1
159.9
NK_2
149.9
NK_3
138.4
NK_4
135.3
NK_5
127.6
NK_6
120.8
NK_7
120.6
NK_8
117.9
NK_9
114.8
NK_10
114.6
NK_11
114.5
NK_12
113.7
NK_13
111.3
NK_14
110.3
NK_15
107.9
NK_16
107.7
NK_17
106.8
NK_18
106.3
NK_19
105.6
NK_20
105.2
NK_21
102.8
NK_22
101.9
NK_23
101.7
NK_24
101.4
NK_25
100.5
NK_26
100.4
NK_27
99.7
NK_28
99.1
NK_29
98.8
NK_30
98.7
NK_31
98.7
NK_32
98.1
NK_33
97.9
NK_34
97.8
NK_35
97.7
NK_36
96.3
NK_37
96.2
NK_38
95.5
NK_39
95.2
NK_40
94.7
NK_41
94.5
NK_42
94.4
NK_43
94.2
NK_44
94.2
NK_45
93.9
NK_46
93.5
NK_47
93.3
NK_48
93.1
NK_49
92.9
NK_50
92.6
NK_51
92.3
NK_52
91.9
NK_53
91.9
NK_54
91.8
NK_55
91.5
NK_56
90.6
NK_57
90.3
NK_58
89.5
NK_59
88.4
NK_60
88.2
NK_61
87.9
NK_62
87.9
NK_63
87.3
NK_64
86.2
NK_65
86.0
NK_66
85.2
NK_67
84.8
NK_68
84.5
NK_69
83.9
NK_70
83.7
NK_71
83.7
NK_72
83.7
NK_73
82.5
NK_74
82.4
NK_75
81.0
NK_76
80.5
NK_77
80.2
NK_78
80.0
NK_79
79.0
NK_80
76.1
NK_81
75.7
NK_82
75.6
NK_83
74.5
NK_84
74.2
NK_85
73.7
NK_86
72.9
NK_87
72.4
NK_88
72.1
NK_89
71.0
NK_90
66.7
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