MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.7 nTPM
HPA Brain:64.6 nTPM
GTEx:37.7 nTPM
FANTOM5:96.3 Scaled Tags Per Million
Pig:136.1 nTPM
Mouse:134.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 64.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.0
1870 Female, age 42, unknown 58.6
2019 Male, age 18, unknown 57.7
2411 Female, age 72, unknown 57.2
1833 Male, age 53, unknown 56.6
1830 Male, age 51, unknown 54.3
2586 Male, age 75, left hemisphere 50.6
1827 Male, age 72, unknown 47.7
2219 Male, age 76, both hemispheres 47.0
2666 Male, age 74, left hemisphere 46.1
2828 Female, age 72, unknown 44.5
Dorsal raphe nucleus
nTPM: 55.9
2750 Male, age 76, both hemispheres 61.0
2298 Female, age 72, unknown 57.4
1828 Male, age 53, unknown 56.6
2016 Female, age 72, unknown 52.7
2047 Male, age 72, unknown 51.7
Inferior colliculus
nTPM: 49.6
2097 Female, age 72, unknown 53.5
1848 Female, age 42, unknown 49.5
1890 Male, age 53, unknown 48.9
2849 Male, age 72, unknown 46.6
Median raphe nucleus
nTPM: 64.6
2220 Male, age 76, midline 64.6
Periaquaductal grey, anterior
nTPM: 52.3
2502 Female, age 75, unknown 56.7
1947 Male, age 18, unknown 55.1
1795 Male, age 51, unknown 45.3
Periaquaductal grey, dorsal
nTPM: 50.1
2850 Male, age 76, both hemispheres 57.0
1840 Male, age 53, unknown 50.4
2464 Female, age 72, unknown 49.6
1831 Male, age 72, unknown 43.4
Periaquaductal grey, lateral
nTPM: 49.8
2272 Male, age 74, both hemispheres 54.0
2140 Male, age 76, both hemispheres 50.2
2053 Male, age 18, unknown 45.3
Pretectal area
nTPM: 52.6
1817 Female, age 42, unknown 58.0
1815 Male, age 53, unknown 57.7
2273 Male, age 74, both hemispheres 57.3
2007 Male, age 72, unknown 55.3
2224 Female, age 72, unknown 55.3
1944 Female, age 72, unknown 53.4
1816 Male, age 51, unknown 52.9
2825 Male, age 18, unknown 48.5
2667 Female, age 75, unknown 47.7
2316 Male, age 76, right hemisphere 47.4
2407 Male, age 75, both hemispheres 44.7
Red nucleus
nTPM: 52.2
1821 Female, age 72, unknown 62.1
1865 Male, age 51, unknown 56.2
1954 Female, age 42, unknown 55.2
1904 Male, age 53, unknown 54.0
2785 Male, age 18, unknown 53.1
2584 Male, age 75, left hemisphere 52.5
2227 Male, age 72, unknown 52.1
2503 Female, age 72, unknown 51.3
2725 Female, age 75, unknown 50.9
2769 Male, age 72, unknown 49.9
2823 Male, age 76, right hemisphere 48.5
2588 Male, age 74, left hemisphere 40.3
Substantia nigra
nTPM: 60.9
2241 Male, age 72, unknown 82.6
1916 Female, age 42, unknown 72.2
1851 Male, age 51, unknown 66.1
2409 Female, age 72, unknown 59.3
1941 Male, age 53, unknown 59.2
2699 Male, age 18, unknown 58.5
1889 Female, age 72, unknown 57.1
2590 Female, age 75, unknown 54.3
2665 Male, age 74, both hemispheres 50.4
2583 Male, age 75, right hemisphere 49.5
Superior colliculus
nTPM: 49.9
2668 Female, age 75, unknown 56.8
1913 Female, age 42, unknown 53.1
2587 Male, age 74, left hemisphere 52.1
2087 Female, age 72, unknown 52.0
1995 Male, age 72, unknown 50.9
2261 Male, age 18, unknown 50.3
1839 Male, age 51, unknown 49.9
1895 Male, age 76, right hemisphere 45.9
1796 Male, age 53, unknown 44.4
2664 Male, age 75, both hemispheres 43.3
Ventral tegmental area
nTPM: 58.4
2223 Female, age 72, unknown 62.7
2410 Female, age 72, unknown 62.2
2218 Male, age 76, both hemispheres 61.8
1915 Female, age 42, unknown 58.4
1942 Male, age 51, unknown 53.0
2021 Male, age 53, unknown 52.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 37.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.7
Samples: 183

Max nTPM: 78.9
Min nTPM: 21.3
Std nTPM: 7.9
Median nTPM: 36.9
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 78.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 61.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 61.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 58.9
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 52.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 50.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 50.6
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 50.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 50.0
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 49.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 49.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 96.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 96.3
FF:10158-103A5 76 years, female 96.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 136.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 131.7
Samples: 4

Max nTPM: 166.8
Min nTPM: 117.5
Sample A Female 166.8
Sample B Female 121.2
Sample C Male 121.1
Sample D Male 117.5
Midbrain
nTPM: 136.1
Samples: 4

Max nTPM: 189.9
Min nTPM: 105.1
Sample A Female 189.9
Sample B Female 128.2
Sample C Male 121.2
Sample D Male 105.1
Periaqueductal gray
nTPM: 113.3
Samples: 3

Max nTPM: 119.3
Min nTPM: 110.3
Sample B Female 110.3
Sample C Male 119.3
Sample D Male 110.4
Superior colliculi
nTPM: 131.1
Samples: 4

Max nTPM: 150.0
Min nTPM: 116.6
Sample A Female 150.0
Sample B Female 131.6
Sample C Male 126.3
Sample D Male 116.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 134.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 134.1
Samples: 4

Max nTPM: 140.2
Min nTPM: 128.5
Sample A Male 133.8
Sample B Male 133.9
Sample C Female 140.2
Sample D Female 128.5

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