A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
191.9
nTPM
Monaco:
549.5
nTPM
Schmiedel:
115.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
191.9
HPA sample
nTPM
Memory B-cell nTPM: 170.0
Samples: 6
Max nTPM: 249.7
Min nTPM: 133.6
P10809_1017
133.6
P10809_1025
153.2
P10809_1044
249.7
P10809_1063
150.5
P10809_1092
164.3
P10809_1105
168.5
Naive B-cell nTPM: 191.9
Samples: 6
Max nTPM: 323.5
Min nTPM: 135.1
P10809_1011
135.1
P10809_1029
166.9
P10809_1048
323.5
P10809_1067
147.3
P10809_1091
186.8
P10809_1104
192.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
549.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 441.5
Samples: 4
Max nTPM: 510.7
Min nTPM: 293.9
RHH5310_R3677
471.4
RHH5218_R3590
510.7
RHH5247_R3619
489.9
RHH5276_R3648
293.9
Naive B-cell nTPM: 549.5
Samples: 4
Max nTPM: 769.6
Min nTPM: 408.6
RHH5308_R3675
506.0
RHH5216_R3588
769.6
RHH5245_R3617
408.6
RHH5274_R3646
513.7
Non-switched memory B-cell nTPM: 433.1
Samples: 4
Max nTPM: 517.2
Min nTPM: 307.7
RHH5309_R3676
392.1
RHH5217_R3589
515.2
RHH5246_R3618
517.2
RHH5275_R3647
307.7
Plasmablast nTPM: 101.1
Samples: 4
Max nTPM: 138.5
Min nTPM: 53.6
RHH5312_R3679
138.5
RHH5220_R3592
109.3
RHH5249_R3621
103.0
RHH5278_R3650
53.6
Switched memory B-cell nTPM: 436.3
Samples: 4
Max nTPM: 472.5
Min nTPM: 365.4
RHH5311_R3678
472.5
RHH5219_R3591
444.3
RHH5248_R3620
462.9
RHH5277_R3649
365.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
115.5
Schmiedel sample id
TPM
Naive B-cell TPM: 115.5
Samples: 91
Max TPM: 168.8
Min TPM: 60.3
B_CELL_NAIVE_1
168.8
B_CELL_NAIVE_2
167.5
B_CELL_NAIVE_3
166.7
B_CELL_NAIVE_4
163.2
B_CELL_NAIVE_5
161.2
B_CELL_NAIVE_6
160.8
B_CELL_NAIVE_7
157.6
B_CELL_NAIVE_8
154.3
B_CELL_NAIVE_9
153.0
B_CELL_NAIVE_10
151.0
B_CELL_NAIVE_11
149.9
B_CELL_NAIVE_12
149.9
B_CELL_NAIVE_13
149.0
B_CELL_NAIVE_14
145.5
B_CELL_NAIVE_15
144.9
B_CELL_NAIVE_16
140.6
B_CELL_NAIVE_17
139.8
B_CELL_NAIVE_18
139.6
B_CELL_NAIVE_19
138.3
B_CELL_NAIVE_20
138.2
B_CELL_NAIVE_21
136.7
B_CELL_NAIVE_22
136.4
B_CELL_NAIVE_23
136.1
B_CELL_NAIVE_24
132.3
B_CELL_NAIVE_25
132.1
B_CELL_NAIVE_26
132.0
B_CELL_NAIVE_27
131.3
B_CELL_NAIVE_28
129.4
B_CELL_NAIVE_29
129.2
B_CELL_NAIVE_30
128.3
B_CELL_NAIVE_31
126.6
B_CELL_NAIVE_32
125.0
B_CELL_NAIVE_33
123.4
B_CELL_NAIVE_34
123.0
B_CELL_NAIVE_35
121.9
B_CELL_NAIVE_36
121.5
B_CELL_NAIVE_37
121.0
B_CELL_NAIVE_38
120.4
B_CELL_NAIVE_39
119.3
B_CELL_NAIVE_40
119.0
B_CELL_NAIVE_41
118.1
B_CELL_NAIVE_42
116.6
B_CELL_NAIVE_43
115.9
B_CELL_NAIVE_44
113.4
B_CELL_NAIVE_45
112.9
B_CELL_NAIVE_46
112.9
B_CELL_NAIVE_47
111.5
B_CELL_NAIVE_48
111.1
B_CELL_NAIVE_49
110.9
B_CELL_NAIVE_50
109.5
B_CELL_NAIVE_51
109.1
B_CELL_NAIVE_52
108.1
B_CELL_NAIVE_53
106.9
B_CELL_NAIVE_54
106.0
B_CELL_NAIVE_55
105.4
B_CELL_NAIVE_56
105.3
B_CELL_NAIVE_57
105.2
B_CELL_NAIVE_58
104.1
B_CELL_NAIVE_59
103.9
B_CELL_NAIVE_60
103.9
B_CELL_NAIVE_61
103.3
B_CELL_NAIVE_62
103.3
B_CELL_NAIVE_63
102.6
B_CELL_NAIVE_64
102.2
B_CELL_NAIVE_65
101.4
B_CELL_NAIVE_66
101.1
B_CELL_NAIVE_67
100.3
B_CELL_NAIVE_68
99.3
B_CELL_NAIVE_69
98.2
B_CELL_NAIVE_70
96.7
B_CELL_NAIVE_71
95.4
B_CELL_NAIVE_72
95.4
B_CELL_NAIVE_73
93.9
B_CELL_NAIVE_74
91.1
B_CELL_NAIVE_75
87.6
B_CELL_NAIVE_76
85.2
B_CELL_NAIVE_77
85.0
B_CELL_NAIVE_78
84.7
B_CELL_NAIVE_79
84.1
B_CELL_NAIVE_80
83.3
B_CELL_NAIVE_81
82.5
B_CELL_NAIVE_82
81.9
B_CELL_NAIVE_83
81.8
B_CELL_NAIVE_84
78.7
B_CELL_NAIVE_85
78.1
B_CELL_NAIVE_86
77.8
B_CELL_NAIVE_87
77.3
B_CELL_NAIVE_88
75.3
B_CELL_NAIVE_89
75.1
B_CELL_NAIVE_90
70.7
B_CELL_NAIVE_91
60.3
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