A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
277.0
nTPM
Monaco:
762.4
nTPM
Schmiedel:
163.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
277.0
HPA sample
nTPM
Classical monocyte nTPM: 277.0
Samples: 6
Max nTPM: 328.4
Min nTPM: 171.1
P10809_1003
312.6
P10809_1020
313.0
P10809_1039
328.4
P10809_1058
171.1
P10809_1080
251.5
P10809_1107
285.2
Intermediate monocyte nTPM: 159.1
Samples: 6
Max nTPM: 181.3
Min nTPM: 128.7
P10809_1004
128.7
P10809_1023
160.6
P10809_1042
169.0
P10809_1061
178.1
P10809_1081
137.0
P10809_1108
181.3
Non-classical monocyte nTPM: 94.5
Samples: 5
Max nTPM: 144.5
Min nTPM: 64.5
P10809_1005
78.5
P10809_1053
72.6
P10809_1072
144.5
P10809_1082
64.5
P10809_1109
112.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
762.4
Monaco sample
nTPM
Classical monocyte nTPM: 762.4
Samples: 4
Max nTPM: 862.2
Min nTPM: 683.0
RHH5313_R3680
760.3
RHH5221_R3593
862.2
RHH5250_R3622
744.0
RHH5279_R3651
683.0
Intermediate monocyte nTPM: 364.5
Samples: 4
Max nTPM: 402.8
Min nTPM: 325.0
RHH5314_R3681
401.6
RHH5222_R3594
325.0
RHH5251_R3623
328.4
RHH5280_R3652
402.8
Non-classical monocyte nTPM: 231.5
Samples: 4
Max nTPM: 300.0
Min nTPM: 173.9
RHH5315_R3682
254.8
RHH5223_R3595
173.9
RHH5252_R3624
300.0
RHH5281_R3653
197.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
163.1
Schmiedel sample id
TPM
Classical monocyte TPM: 163.1
Samples: 91
Max TPM: 220.0
Min TPM: 115.7
MONOCYTES_1
220.0
MONOCYTES_2
213.6
MONOCYTES_3
210.3
MONOCYTES_4
208.8
MONOCYTES_5
207.8
MONOCYTES_6
201.6
MONOCYTES_7
197.8
MONOCYTES_8
196.6
MONOCYTES_9
196.2
MONOCYTES_10
195.3
MONOCYTES_11
194.3
MONOCYTES_12
193.3
MONOCYTES_13
191.9
MONOCYTES_14
191.7
MONOCYTES_15
191.3
MONOCYTES_16
190.9
MONOCYTES_17
190.9
MONOCYTES_18
190.7
MONOCYTES_19
184.5
MONOCYTES_20
182.7
MONOCYTES_21
182.3
MONOCYTES_22
182.0
MONOCYTES_23
182.0
MONOCYTES_24
182.0
MONOCYTES_25
181.8
MONOCYTES_26
181.7
MONOCYTES_27
181.2
MONOCYTES_28
179.6
MONOCYTES_29
179.6
MONOCYTES_30
178.0
MONOCYTES_31
177.0
MONOCYTES_32
176.4
MONOCYTES_33
175.2
MONOCYTES_34
174.8
MONOCYTES_35
172.2
MONOCYTES_36
172.2
MONOCYTES_37
171.2
MONOCYTES_38
170.8
MONOCYTES_39
170.0
MONOCYTES_40
169.9
MONOCYTES_41
169.3
MONOCYTES_42
168.6
MONOCYTES_43
168.5
MONOCYTES_44
167.5
MONOCYTES_45
166.9
MONOCYTES_46
164.7
MONOCYTES_47
164.5
MONOCYTES_48
159.7
MONOCYTES_49
158.2
MONOCYTES_50
157.3
MONOCYTES_51
156.4
MONOCYTES_52
155.0
MONOCYTES_53
154.2
MONOCYTES_54
153.6
MONOCYTES_55
153.4
MONOCYTES_56
151.8
MONOCYTES_57
150.4
MONOCYTES_58
149.0
MONOCYTES_59
148.9
MONOCYTES_60
148.9
MONOCYTES_61
148.8
MONOCYTES_62
147.2
MONOCYTES_63
147.2
MONOCYTES_64
146.5
MONOCYTES_65
145.6
MONOCYTES_66
145.3
MONOCYTES_67
144.5
MONOCYTES_68
144.4
MONOCYTES_69
142.5
MONOCYTES_70
142.4
MONOCYTES_71
141.4
MONOCYTES_72
140.6
MONOCYTES_73
140.6
MONOCYTES_74
140.3
MONOCYTES_75
140.2
MONOCYTES_76
139.4
MONOCYTES_77
136.0
MONOCYTES_78
135.3
MONOCYTES_79
134.5
MONOCYTES_80
133.5
MONOCYTES_81
133.2
MONOCYTES_82
130.5
MONOCYTES_83
128.7
MONOCYTES_84
127.9
MONOCYTES_85
125.3
MONOCYTES_86
122.5
MONOCYTES_87
117.9
MONOCYTES_88
116.8
MONOCYTES_89
116.6
MONOCYTES_90
116.1
MONOCYTES_91
115.7
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Non-classical monocyte TPM: 49.5
Samples: 90
Max TPM: 82.9
Min TPM: 12.5
M2_1
82.9
M2_2
78.8
M2_3
74.0
M2_4
71.9
M2_5
71.3
M2_6
70.9
M2_7
70.0
M2_8
69.4
M2_9
68.3
M2_10
66.6
M2_11
66.2
M2_12
66.0
M2_13
62.7
M2_14
61.7
M2_15
60.0
M2_16
59.3
M2_17
58.8
M2_18
58.7
M2_19
58.6
M2_20
58.5
M2_21
58.2
M2_22
57.4
M2_23
57.2
M2_24
57.2
M2_25
56.7
M2_26
56.4
M2_27
56.3
M2_28
56.0
M2_29
54.8
M2_30
54.8
M2_31
54.6
M2_32
53.3
M2_33
53.0
M2_34
53.0
M2_35
52.9
M2_36
51.7
M2_37
51.5
M2_38
51.4
M2_39
50.6
M2_40
50.2
M2_41
50.2
M2_42
49.9
M2_43
49.0
M2_44
47.9
M2_45
47.9
M2_46
47.7
M2_47
47.6
M2_48
47.3
M2_49
47.3
M2_50
46.8
M2_51
46.7
M2_52
46.6
M2_53
46.0
M2_54
45.6
M2_55
45.5
M2_56
45.0
M2_57
45.0
M2_58
44.4
M2_59
44.0
M2_60
43.8
M2_61
43.7
M2_62
43.7
M2_63
43.6
M2_64
43.0
M2_65
42.9
M2_66
42.8
M2_67
42.2
M2_68
41.4
M2_69
41.0
M2_70
40.9
M2_71
40.6
M2_72
40.3
M2_73
40.1
M2_74
40.1
M2_75
39.2
M2_76
37.6
M2_77
37.3
M2_78
36.5
M2_79
36.2
M2_80
36.2
M2_81
35.9
M2_82
35.8
M2_83
35.4
M2_84
33.8
M2_85
31.5
M2_86
30.6
M2_87
29.1
M2_88
25.9
M2_89
23.7
M2_90
12.5
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