A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
74.1
nTPM
Monaco:
328.5
nTPM
Schmiedel:
141.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.1
HPA sample
nTPM
NK-cell nTPM: 74.1
Samples: 6
Max nTPM: 94.5
Min nTPM: 32.6
P10809_1013
32.6
P10809_1033
94.5
P10809_1052
65.3
P10809_1071
83.9
P10809_1093
91.6
P10809_1103
76.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
328.5
Monaco sample
nTPM
NK-cell nTPM: 328.5
Samples: 4
Max nTPM: 446.7
Min nTPM: 203.4
RHH5316_R3683
375.7
RHH5224_R3596
446.7
RHH5253_R3625
203.4
RHH5282_R3654
288.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
141.1
Schmiedel sample id
TPM
NK-cell TPM: 141.1
Samples: 90
Max TPM: 210.3
Min TPM: 76.1
NK_1
210.3
NK_2
210.1
NK_3
207.1
NK_4
205.0
NK_5
194.6
NK_6
192.5
NK_7
184.3
NK_8
179.5
NK_9
179.2
NK_10
177.1
NK_11
174.9
NK_12
174.0
NK_13
173.6
NK_14
172.8
NK_15
171.7
NK_16
171.5
NK_17
170.4
NK_18
170.1
NK_19
169.0
NK_20
168.9
NK_21
166.9
NK_22
162.5
NK_23
162.2
NK_24
160.7
NK_25
160.6
NK_26
160.4
NK_27
157.6
NK_28
156.8
NK_29
155.9
NK_30
155.5
NK_31
154.8
NK_32
153.5
NK_33
151.7
NK_34
151.6
NK_35
150.5
NK_36
149.8
NK_37
149.5
NK_38
149.2
NK_39
147.6
NK_40
147.0
NK_41
145.6
NK_42
143.5
NK_43
140.5
NK_44
139.3
NK_45
136.2
NK_46
135.4
NK_47
134.8
NK_48
134.7
NK_49
134.7
NK_50
134.5
NK_51
133.0
NK_52
132.9
NK_53
132.2
NK_54
132.1
NK_55
131.3
NK_56
130.7
NK_57
130.5
NK_58
130.2
NK_59
129.6
NK_60
129.2
NK_61
128.6
NK_62
128.2
NK_63
128.0
NK_64
121.5
NK_65
121.0
NK_66
120.8
NK_67
120.6
NK_68
120.0
NK_69
119.5
NK_70
118.7
NK_71
118.4
NK_72
116.4
NK_73
115.7
NK_74
113.3
NK_75
109.3
NK_76
107.1
NK_77
104.8
NK_78
102.5
NK_79
102.0
NK_80
101.6
NK_81
100.7
NK_82
100.0
NK_83
99.3
NK_84
98.2
NK_85
96.5
NK_86
91.9
NK_87
91.8
NK_88
91.3
NK_89
85.7
NK_90
76.1
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