HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.5 nTPM
HPA Brain:40.1 nTPM
GTEx:14.5 nTPM
FANTOM5:19.6 Scaled Tags Per Million
Pig:28.0 nTPM
Mouse:39.8 nTPM
Allen mouse:7.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 40.1
Sample id Sample description nTPM
Hippocampus
nTPM: 36.3
2148 Female, age 91, left hemisphere 51.1
1898 Male, age 80, left hemisphere 39.5
1855 Male, age 76, left hemisphere 39.2
2621 Female, age 67, right hemisphere 34.0
2529 Female, age 94, left hemisphere 29.6
1911 Female, age 85, right hemisphere 24.4
Dentate gyrus
nTPM: 40.1
1927 Female, age 91, both hemispheres 65.9
2530 Female, age 94, left hemisphere 41.1
2010 Male, age 76, both hemispheres 36.9
2528 Male, age 74, both hemispheres 33.6
2531 Female, age 67, both hemispheres 32.4
2246 Female, age 85, both hemispheres 30.5
Entorhinal gyrus
nTPM: 30.2
2613 Female, age 94, left hemisphere 47.5
2686 Male, age 75, right hemisphere 37.2
2764 Male, age 80, right hemisphere 32.0
2117 Female, age 91, right hemisphere 23.8
1787 Male, age 76, left hemisphere 21.9
1938 Female, age 85, left hemisphere 18.7
Hippocampus, CA1
nTPM: 39.3
2749 Male, age 80, left hemisphere 50.7
2045 Male, age 76, both hemispheres 43.2
2082 Female, age 91, right hemisphere 37.3
1873 Female, age 85, both hemispheres 37.2
2527 Male, age 74, both hemispheres 28.2
Hippocampus, CA2
nTPM: 38.9
1892 Male, age 76, both hemispheres 74.0
1963 Male, age 80, left hemisphere 41.4
2437 Female, age 94, left hemisphere 36.1
1940 Female, age 85, left hemisphere 29.4
2113 Female, age 91, right hemisphere 28.4
2249 Male, age 74, both hemispheres 24.0
Hippocampus, CA3
nTPM: 38.2
2620 Female, age 94, left hemisphere 60.8
1867 Male, age 76, both hemispheres 41.7
2861 Female, age 67, both hemispheres 40.4
2137 Male, age 80, left hemisphere 37.5
1891 Female, age 85, both hemispheres 24.6
2436 Male, age 74, both hemispheres 24.0
Parahippocampal cortex
nTPM: 30.9
2245 Female, age 91, both hemispheres 37.0
2693 Female, age 94, both hemispheres 37.0
2250 Female, age 67, right hemisphere 36.1
2622 Female, age 67, right hemisphere 34.4
1990 Female, age 91, right hemisphere 30.5
1850 Male, age 80, both hemispheres 30.4
2018 Male, age 76, both hemispheres 29.8
2532 Female, age 72, left hemisphere 25.3
1933 Female, age 85, both hemispheres 24.5
2692 Male, age 74, both hemispheres 24.3
Perirhinal gyrus
nTPM: 33.7
2521 Female, age 94, right hemisphere 43.0
1847 Female, age 91, left hemisphere 41.0
1794 Male, age 80, right hemisphere 37.1
1841 Female, age 85, right hemisphere 26.4
2848 Male, age 76, right hemisphere 20.9
Subiculum
nTPM: 28.9
2438 Female, age 94, left hemisphere 37.9
1901 Male, age 80, both hemispheres 32.5
2729 Female, age 91, right hemisphere 28.9
1977 Female, age 85, both hemispheres 28.0
2619 Male, age 74, both hemispheres 27.8
2042 Male, age 76, both hemispheres 18.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 14.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 14.5
Samples: 255

Max nTPM: 112.3
Min nTPM: 3.1
Std nTPM: 9.2
Median nTPM: 13.2
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 112.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 42.6
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 40.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 38.0
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 36.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 33.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 33.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 32.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 31.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 31.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 30.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 19.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 19.6
FF:10169-103B7 60 years, female 24.9
FF:10153-102I9 76 years, female 14.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 28.0
Pig sample Sample description nTPM
Subiculum
nTPM: 28.0
Samples: 4

Max nTPM: 33.7
Min nTPM: 20.9
Sample A Female 33.7
Sample B Female 25.4
Sample C Male 31.9
Sample D Male 20.9
Dorsal hippocampus
nTPM: 20.2
Samples: 4

Max nTPM: 25.3
Min nTPM: 14.2
Sample A Female 21.1
Sample B Female 25.3
Sample C Male 20.3
Sample D Male 14.2
Entorhinal cortex
nTPM: 24.0
Samples: 4

Max nTPM: 28.9
Min nTPM: 18.1
Sample A Female 26.9
Sample B Female 18.1
Sample C Male 28.9
Sample D Male 21.9
Ventral hippocampus
nTPM: 26.5
Samples: 4

Max nTPM: 38.0
Min nTPM: 17.6
Sample A Female 19.9
Sample B Female 17.6
Sample C Male 38.0
Sample D Male 30.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 39.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 36.8
Samples: 4

Max nTPM: 43.8
Min nTPM: 33.2
Sample A Male 36.8
Sample B Male 33.2
Sample C Female 33.2
Sample D Female 43.8
Hippocampal formation
nTPM: 39.8
Samples: 4

Max nTPM: 44.2
Min nTPM: 33.8
Sample A Male 33.8
Sample B Male 41.3
Sample C Female 39.9
Sample D Female 44.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 7.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.3
68924841 Antisense, RP_050309_01_B04, Mouse strain C57BL/6J (56 days, male) 7.3
70301082 Antisense, RP_050309_01_B04, Mouse strain C57BL/6J (56 days, male) 3.6

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