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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:4533.2 nTPM
HPA Brain:2374.9 nTPM
GTEx:4533.2 nTPM
FANTOM5:1796.4 Scaled Tags Per Million
Pig:722.9 nTPM
Mouse:686.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2374.9
Sample id Sample description nTPM
Amygdala
nTPM: 2191.0
2514 Male, age 75, right hemisphere 2480.6
2695 Female, age 67, right hemisphere 2249.8
1987 Female, age 91, left hemisphere 2181.9
2517 Female, age 94, left hemisphere 2155.9
2814 Male, age 76, right hemisphere 1886.8
Basal amygdala
nTPM: 1924.8
2609 Male, age 75, right hemisphere 2476.1
2827 Female, age 67, right hemisphere 2016.1
2243 Female, age 91, right hemisphere 1944.6
2110 Male, age 80, left hemisphere 1927.6
1955 Male, age 76, both hemispheres 1631.1
2685 Female, age 94, left hemisphere 1553.4
Central amygdala
nTPM: 2374.9
2515 Male, age 75, right hemisphere 3619.4
2826 Female, age 94, left hemisphere 2785.1
2239 Male, age 80, left hemisphere 1955.1
1905 Male, age 76, both hemispheres 1824.3
2701 Female, age 91, right hemisphere 1690.7
Corticomedial amygdala
nTPM: 1959.5
2428 Male, age 75, right hemisphere 2988.7
2240 Male, age 76, both hemispheres 1897.5
2242 Female, age 91, right hemisphere 1809.9
2829 Male, age 80, left hemisphere 1805.7
2535 Female, age 67, right hemisphere 1768.7
2429 Female, age 94, left hemisphere 1486.3
Lateral amygdala
nTPM: 2162.3
2830 Female, age 67, right hemisphere 2647.0
2516 Male, age 75, right hemisphere 2454.9
2256 Male, age 80, left hemisphere 2442.5
2534 Female, age 94, left hemisphere 2068.7
2255 Female, age 91, right hemisphere 1772.6
1883 Male, age 76, both hemispheres 1588.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4533.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 4533.2
Samples: 181

Max nTPM: 12353.2
Min nTPM: 1677.6
Std nTPM: 1627.3
Median nTPM: 4206.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 12353.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 10563.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 8949.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 8931.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 8482.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 8374.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 8230.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 8133.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 7745.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 7725.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 7160.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 7141.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 6926.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 6890.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 6585.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 6566.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 6493.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 6491.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 6420.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 6408.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 6359.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 6338.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 6258.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 6226.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 6107.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 6092.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 6029.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 6000.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 5919.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 5877.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 5841.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 5693.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 5692.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 5674.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 5649.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 5622.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 5572.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 5542.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 5525.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 5518.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 5503.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 5446.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 5421.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 5409.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 5369.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 5352.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 5320.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 5298.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 5276.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 5267.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 5224.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 5159.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 5158.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 5122.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 5117.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 5092.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 5084.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 5081.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 5058.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 5030.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 5024.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 5022.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 4989.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 4969.4
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 4900.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 4885.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 4876.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 4867.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 4858.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 4830.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 4806.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 4785.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 4773.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 4750.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 4671.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 4657.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 4648.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 4577.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 4555.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 4518.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 4510.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 4458.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 4427.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 4408.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 4369.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 4369.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 4276.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 4257.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 4257.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 4239.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 4206.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 4204.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 4203.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 4194.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 4185.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 4154.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 4106.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 4093.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 4082.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 4069.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 4053.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 4050.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 4021.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 4017.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 4004.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 3997.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 3976.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 3951.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 3913.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 3901.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 3898.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 3877.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 3831.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 3826.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 3814.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 3800.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 3797.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 3793.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 3786.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 3777.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 3759.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 3744.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 3703.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 3633.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 3565.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 3563.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 3558.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 3535.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 3514.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 3486.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 3473.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 3459.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 3454.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 3429.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 3371.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 3368.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 3282.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 3279.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 3261.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 3254.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 3237.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 3229.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 3185.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 3161.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 3138.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 3111.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 3109.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 3093.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 3086.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 3063.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 3047.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 2993.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 2945.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 2924.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 2895.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 2841.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 2832.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 2829.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 2808.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 2807.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 2786.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 2785.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 2763.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 2756.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 2692.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 2649.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 2643.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 2627.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 2625.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 2622.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 2611.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 2534.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 2507.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 2501.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 2481.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 2430.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 2402.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 2182.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 2136.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 2010.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1677.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1796.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1796.4
FF:10151-102I7 76 years, female 1796.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

722.9
Pig sample Sample description nTPM
Amygdala
nTPM: 723.0
Samples: 4

Max nTPM: 851.7
Min nTPM: 462.0
Sample A Female 847.0
Sample B Female 851.7
Sample C Male 731.1
Sample D Male 462.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

686.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 686.1
Samples: 4

Max nTPM: 789.6
Min nTPM: 591.5
Sample A Male 591.5
Sample B Male 668.1
Sample C Female 789.6
Sample D Female 695.1

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