MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4665.9 nTPM
HPA Brain:2791.7 nTPM
GTEx:4665.9 nTPM
FANTOM5:2500.7 Scaled Tags Per Million
Pig:1805.0 nTPM
Mouse:325.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 2791.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 2291.3
2586 Male, age 75, left hemisphere 3358.7
2666 Male, age 74, left hemisphere 2444.8
2828 Female, age 72, unknown 2385.8
1830 Male, age 51, unknown 2383.8
1870 Female, age 42, unknown 2371.0
1833 Male, age 53, unknown 2347.8
2411 Female, age 72, unknown 2186.5
2019 Male, age 18, unknown 2145.0
1827 Male, age 72, unknown 1737.0
2219 Male, age 76, both hemispheres 1552.9
Dorsal raphe nucleus
nTPM: 2011.1
2750 Male, age 76, both hemispheres 2316.8
2016 Female, age 72, unknown 2216.9
1828 Male, age 53, unknown 1959.3
2047 Male, age 72, unknown 1835.2
2298 Female, age 72, unknown 1727.4
Inferior colliculus
nTPM: 1743.6
1890 Male, age 53, unknown 1811.9
2849 Male, age 72, unknown 1745.3
1848 Female, age 42, unknown 1744.1
2097 Female, age 72, unknown 1673.1
Median raphe nucleus
nTPM: 2113.8
2220 Male, age 76, midline 2113.8
Periaquaductal grey, anterior
nTPM: 1930.6
2502 Female, age 75, unknown 2140.4
1795 Male, age 51, unknown 2061.5
1947 Male, age 18, unknown 1589.9
Periaquaductal grey, dorsal
nTPM: 1955.4
1831 Male, age 72, unknown 2200.6
2464 Female, age 72, unknown 1922.8
2850 Male, age 76, both hemispheres 1916.8
1840 Male, age 53, unknown 1781.4
Periaquaductal grey, lateral
nTPM: 2084.2
2053 Male, age 18, unknown 2307.6
2140 Male, age 76, both hemispheres 1986.0
2272 Male, age 74, both hemispheres 1959.1
Pretectal area
nTPM: 1889.0
2407 Male, age 75, both hemispheres 2314.6
1815 Male, age 53, unknown 2245.5
1817 Female, age 42, unknown 2223.6
2825 Male, age 18, unknown 1927.6
2273 Male, age 74, both hemispheres 1791.6
2667 Female, age 75, unknown 1770.2
2316 Male, age 76, right hemisphere 1749.3
2224 Female, age 72, unknown 1703.6
2007 Male, age 72, unknown 1701.4
1816 Male, age 51, unknown 1697.1
1944 Female, age 72, unknown 1654.1
Red nucleus
nTPM: 2753.1
1904 Male, age 53, unknown 3366.1
1954 Female, age 42, unknown 3103.4
1865 Male, age 51, unknown 3055.4
2227 Male, age 72, unknown 2976.9
1821 Female, age 72, unknown 2941.8
2769 Male, age 72, unknown 2933.9
2584 Male, age 75, left hemisphere 2905.4
2503 Female, age 72, unknown 2819.0
2785 Male, age 18, unknown 2452.9
2823 Male, age 76, right hemisphere 2387.1
2725 Female, age 75, unknown 2089.8
2588 Male, age 74, left hemisphere 2005.7
Substantia nigra
nTPM: 2791.7
2699 Male, age 18, unknown 3791.6
1851 Male, age 51, unknown 3589.5
1916 Female, age 42, unknown 3159.5
2590 Female, age 75, unknown 2930.8
2665 Male, age 74, both hemispheres 2700.7
2409 Female, age 72, unknown 2601.9
2583 Male, age 75, right hemisphere 2550.3
2241 Male, age 72, unknown 2515.4
1889 Female, age 72, unknown 2123.6
1941 Male, age 53, unknown 1953.9
Superior colliculus
nTPM: 2238.8
2664 Male, age 75, both hemispheres 3104.6
1995 Male, age 72, unknown 2763.9
1913 Female, age 42, unknown 2597.6
2668 Female, age 75, unknown 2512.1
2587 Male, age 74, left hemisphere 2192.0
1796 Male, age 53, unknown 2109.2
2087 Female, age 72, unknown 1978.4
2261 Male, age 18, unknown 1930.0
1839 Male, age 51, unknown 1911.1
1895 Male, age 76, right hemisphere 1289.3
Ventral tegmental area
nTPM: 2758.9
2223 Female, age 72, unknown 3653.5
1915 Female, age 42, unknown 3131.7
2021 Male, age 53, unknown 2725.6
2218 Male, age 76, both hemispheres 2515.6
2410 Female, age 72, unknown 2494.4
1942 Male, age 51, unknown 2032.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 4665.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4665.9
Samples: 183

Max nTPM: 14289.1
Min nTPM: 986.8
Std nTPM: 2107.8
Median nTPM: 4207.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 14289.1
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 12496.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 11221.6
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 10447.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 9594.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 9240.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 8678.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 8563.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 8466.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 8450.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 8396.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2500.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2500.7
FF:10158-103A5 76 years, female 2500.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1805.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1795.3
Samples: 4

Max nTPM: 2281.2
Min nTPM: 1365.4
Sample A Female 2281.2
Sample B Female 1560.9
Sample C Male 1365.4
Sample D Male 1973.5
Midbrain
nTPM: 1805.0
Samples: 4

Max nTPM: 3767.9
Min nTPM: 931.5
Sample A Female 3767.9
Sample B Female 1479.8
Sample C Male 1040.7
Sample D Male 931.5
Periaqueductal gray
nTPM: 1014.4
Samples: 3

Max nTPM: 1075.1
Min nTPM: 980.3
Sample B Female 1075.1
Sample C Male 980.3
Sample D Male 987.8
Superior colliculi
nTPM: 1676.6
Samples: 4

Max nTPM: 2230.6
Min nTPM: 1319.8
Sample A Female 2230.6
Sample B Female 1772.8
Sample C Male 1319.8
Sample D Male 1383.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 325.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 325.7
Samples: 4

Max nTPM: 387.6
Min nTPM: 278.9
Sample A Male 387.6
Sample B Male 306.2
Sample C Female 278.9
Sample D Female 330.0

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