MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:74.8 nTPM
HPA Brain:230.8 nTPM
GTEx:74.8 nTPM
FANTOM5:435.1 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 230.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 212.3
2586 Male, age 75, left hemisphere 255.4
2666 Male, age 74, left hemisphere 254.1
1827 Male, age 72, unknown 231.0
2828 Female, age 72, unknown 216.7
2219 Male, age 76, both hemispheres 216.1
1833 Male, age 53, unknown 215.0
1830 Male, age 51, unknown 187.6
2411 Female, age 72, unknown 183.7
2019 Male, age 18, unknown 182.5
1870 Female, age 42, unknown 181.3
Dorsal raphe nucleus
nTPM: 161.9
2750 Male, age 76, both hemispheres 208.2
2047 Male, age 72, unknown 156.7
1828 Male, age 53, unknown 153.8
2298 Female, age 72, unknown 153.7
2016 Female, age 72, unknown 137.2
Inferior colliculus
nTPM: 180.4
2849 Male, age 72, unknown 193.7
1890 Male, age 53, unknown 180.1
2097 Female, age 72, unknown 175.4
1848 Female, age 42, unknown 172.4
Median raphe nucleus
nTPM: 213.9
2220 Male, age 76, midline 213.9
Periaquaductal grey, anterior
nTPM: 203.7
2502 Female, age 75, unknown 213.6
1795 Male, age 51, unknown 212.5
1947 Male, age 18, unknown 184.9
Periaquaductal grey, dorsal
nTPM: 165.0
1831 Male, age 72, unknown 217.1
2464 Female, age 72, unknown 162.5
1840 Male, age 53, unknown 150.0
2850 Male, age 76, both hemispheres 130.4
Periaquaductal grey, lateral
nTPM: 149.1
2053 Male, age 18, unknown 170.7
2272 Male, age 74, both hemispheres 159.1
2140 Male, age 76, both hemispheres 117.3
Pretectal area
nTPM: 212.7
1816 Male, age 51, unknown 276.5
1815 Male, age 53, unknown 251.0
1817 Female, age 42, unknown 248.8
2667 Female, age 75, unknown 233.2
2007 Male, age 72, unknown 228.0
1944 Female, age 72, unknown 217.4
2407 Male, age 75, both hemispheres 204.4
2825 Male, age 18, unknown 196.2
2316 Male, age 76, right hemisphere 179.4
2224 Female, age 72, unknown 174.2
2273 Male, age 74, both hemispheres 130.1
Red nucleus
nTPM: 230.8
2823 Male, age 76, right hemisphere 275.9
2588 Male, age 74, left hemisphere 254.7
1904 Male, age 53, unknown 251.1
2584 Male, age 75, left hemisphere 243.7
2503 Female, age 72, unknown 228.4
2785 Male, age 18, unknown 225.4
2725 Female, age 75, unknown 224.9
1821 Female, age 72, unknown 217.6
1954 Female, age 42, unknown 213.7
1865 Male, age 51, unknown 211.7
2769 Male, age 72, unknown 211.2
2227 Male, age 72, unknown 210.8
Substantia nigra
nTPM: 204.2
2583 Male, age 75, right hemisphere 247.4
1916 Female, age 42, unknown 235.9
1889 Female, age 72, unknown 221.5
1851 Male, age 51, unknown 207.5
2590 Female, age 75, unknown 201.9
2699 Male, age 18, unknown 201.3
2665 Male, age 74, both hemispheres 192.5
2409 Female, age 72, unknown 185.3
1941 Male, age 53, unknown 183.9
2241 Male, age 72, unknown 165.0
Superior colliculus
nTPM: 204.0
2261 Male, age 18, unknown 242.4
1895 Male, age 76, right hemisphere 230.0
2087 Female, age 72, unknown 219.7
1796 Male, age 53, unknown 217.6
2664 Male, age 75, both hemispheres 209.2
2587 Male, age 74, left hemisphere 193.7
1913 Female, age 42, unknown 193.5
1839 Male, age 51, unknown 180.7
2668 Female, age 75, unknown 177.3
1995 Male, age 72, unknown 175.5
Ventral tegmental area
nTPM: 187.7
2218 Male, age 76, both hemispheres 212.9
1915 Female, age 42, unknown 193.0
2223 Female, age 72, unknown 191.2
2410 Female, age 72, unknown 187.3
1942 Male, age 51, unknown 180.6
2021 Male, age 53, unknown 161.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 74.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.8
Samples: 183

Max nTPM: 145.1
Min nTPM: 29.6
Std nTPM: 18.7
Median nTPM: 73.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 145.1
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 137.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 132.0
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 127.2
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 119.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 118.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 113.7
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 113.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 113.1
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 103.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 102.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 435.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 435.1
FF:10158-103A5 76 years, female 435.1

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