A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
110.7
nTPM
Monaco:
312.1
nTPM
Schmiedel:
57.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
110.7
HPA sample
nTPM
Memory B-cell nTPM: 107.3
Samples: 6
Max nTPM: 113.6
Min nTPM: 96.1
P10809_1017
96.1
P10809_1025
113.5
P10809_1044
104.2
P10809_1063
105.5
P10809_1092
113.6
P10809_1105
110.9
Naive B-cell nTPM: 110.7
Samples: 6
Max nTPM: 157.6
Min nTPM: 92.7
P10809_1011
92.7
P10809_1029
95.0
P10809_1048
157.6
P10809_1067
94.9
P10809_1091
116.0
P10809_1104
108.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
312.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 223.7
Samples: 4
Max nTPM: 284.9
Min nTPM: 172.6
RHH5310_R3677
259.2
RHH5218_R3590
178.0
RHH5247_R3619
284.9
RHH5276_R3648
172.6
Naive B-cell nTPM: 217.7
Samples: 4
Max nTPM: 267.6
Min nTPM: 165.5
RHH5308_R3675
201.8
RHH5216_R3588
267.6
RHH5245_R3617
235.9
RHH5274_R3646
165.5
Non-switched memory B-cell nTPM: 232.1
Samples: 4
Max nTPM: 279.7
Min nTPM: 190.9
RHH5309_R3676
265.0
RHH5217_R3589
192.8
RHH5246_R3618
279.7
RHH5275_R3647
190.9
Plasmablast nTPM: 312.1
Samples: 4
Max nTPM: 376.2
Min nTPM: 262.3
RHH5312_R3679
298.0
RHH5220_R3592
376.2
RHH5249_R3621
312.0
RHH5278_R3650
262.3
Switched memory B-cell nTPM: 230.9
Samples: 4
Max nTPM: 276.0
Min nTPM: 186.7
RHH5311_R3678
276.0
RHH5219_R3591
220.6
RHH5248_R3620
240.3
RHH5277_R3649
186.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.8
Schmiedel sample id
TPM
Naive B-cell TPM: 57.8
Samples: 91
Max TPM: 79.3
Min TPM: 34.3
B_CELL_NAIVE_1
79.3
B_CELL_NAIVE_2
75.5
B_CELL_NAIVE_3
71.0
B_CELL_NAIVE_4
70.8
B_CELL_NAIVE_5
70.4
B_CELL_NAIVE_6
70.1
B_CELL_NAIVE_7
68.7
B_CELL_NAIVE_8
68.6
B_CELL_NAIVE_9
67.5
B_CELL_NAIVE_10
67.3
B_CELL_NAIVE_11
66.7
B_CELL_NAIVE_12
66.6
B_CELL_NAIVE_13
66.5
B_CELL_NAIVE_14
65.9
B_CELL_NAIVE_15
65.6
B_CELL_NAIVE_16
65.1
B_CELL_NAIVE_17
64.8
B_CELL_NAIVE_18
64.7
B_CELL_NAIVE_19
64.4
B_CELL_NAIVE_20
64.4
B_CELL_NAIVE_21
64.3
B_CELL_NAIVE_22
64.2
B_CELL_NAIVE_23
63.8
B_CELL_NAIVE_24
63.7
B_CELL_NAIVE_25
63.4
B_CELL_NAIVE_26
63.1
B_CELL_NAIVE_27
63.1
B_CELL_NAIVE_28
62.9
B_CELL_NAIVE_29
62.8
B_CELL_NAIVE_30
62.4
B_CELL_NAIVE_31
62.4
B_CELL_NAIVE_32
62.1
B_CELL_NAIVE_33
61.7
B_CELL_NAIVE_34
61.7
B_CELL_NAIVE_35
61.5
B_CELL_NAIVE_36
61.4
B_CELL_NAIVE_37
61.1
B_CELL_NAIVE_38
60.9
B_CELL_NAIVE_39
60.9
B_CELL_NAIVE_40
60.8
B_CELL_NAIVE_41
60.8
B_CELL_NAIVE_42
60.0
B_CELL_NAIVE_43
59.9
B_CELL_NAIVE_44
59.5
B_CELL_NAIVE_45
59.5
B_CELL_NAIVE_46
59.5
B_CELL_NAIVE_47
59.2
B_CELL_NAIVE_48
58.5
B_CELL_NAIVE_49
58.1
B_CELL_NAIVE_50
58.1
B_CELL_NAIVE_51
57.8
B_CELL_NAIVE_52
57.8
B_CELL_NAIVE_53
57.2
B_CELL_NAIVE_54
56.6
B_CELL_NAIVE_55
56.2
B_CELL_NAIVE_56
56.1
B_CELL_NAIVE_57
56.0
B_CELL_NAIVE_58
56.0
B_CELL_NAIVE_59
55.9
B_CELL_NAIVE_60
55.7
B_CELL_NAIVE_61
55.7
B_CELL_NAIVE_62
55.7
B_CELL_NAIVE_63
55.4
B_CELL_NAIVE_64
55.0
B_CELL_NAIVE_65
54.4
B_CELL_NAIVE_66
53.6
B_CELL_NAIVE_67
53.0
B_CELL_NAIVE_68
52.9
B_CELL_NAIVE_69
52.8
B_CELL_NAIVE_70
52.5
B_CELL_NAIVE_71
52.2
B_CELL_NAIVE_72
52.1
B_CELL_NAIVE_73
52.1
B_CELL_NAIVE_74
50.5
B_CELL_NAIVE_75
50.4
B_CELL_NAIVE_76
50.2
B_CELL_NAIVE_77
48.9
B_CELL_NAIVE_78
48.4
B_CELL_NAIVE_79
47.9
B_CELL_NAIVE_80
47.4
B_CELL_NAIVE_81
46.0
B_CELL_NAIVE_82
45.9
B_CELL_NAIVE_83
44.9
B_CELL_NAIVE_84
44.3
B_CELL_NAIVE_85
42.8
B_CELL_NAIVE_86
40.7
B_CELL_NAIVE_87
39.1
B_CELL_NAIVE_88
38.4
B_CELL_NAIVE_89
37.2
B_CELL_NAIVE_90
36.5
B_CELL_NAIVE_91
34.3
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