A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
161.2
nTPM
Monaco:
272.3
nTPM
Schmiedel:
83.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
161.2
HPA sample
nTPM
Classical monocyte nTPM: 96.5
Samples: 6
Max nTPM: 113.0
Min nTPM: 75.6
P10809_1003
95.0
P10809_1020
107.3
P10809_1039
113.0
P10809_1058
75.6
P10809_1080
87.6
P10809_1107
100.2
Intermediate monocyte nTPM: 117.5
Samples: 6
Max nTPM: 177.0
Min nTPM: 84.2
P10809_1004
105.7
P10809_1023
108.0
P10809_1042
136.5
P10809_1061
177.0
P10809_1081
84.2
P10809_1108
93.4
Non-classical monocyte nTPM: 161.2
Samples: 5
Max nTPM: 325.1
Min nTPM: 89.4
P10809_1005
102.1
P10809_1053
168.0
P10809_1072
325.1
P10809_1082
89.4
P10809_1109
121.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
272.3
Monaco sample
nTPM
Classical monocyte nTPM: 217.6
Samples: 4
Max nTPM: 266.4
Min nTPM: 166.0
RHH5313_R3680
266.4
RHH5221_R3593
259.2
RHH5250_R3622
178.7
RHH5279_R3651
166.0
Intermediate monocyte nTPM: 241.0
Samples: 4
Max nTPM: 340.1
Min nTPM: 179.0
RHH5314_R3681
225.1
RHH5222_R3594
340.1
RHH5251_R3623
219.7
RHH5280_R3652
179.0
Non-classical monocyte nTPM: 272.3
Samples: 4
Max nTPM: 346.9
Min nTPM: 231.6
RHH5315_R3682
265.6
RHH5223_R3595
346.9
RHH5252_R3624
245.3
RHH5281_R3653
231.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
83.0
Schmiedel sample id
TPM
Classical monocyte TPM: 76.6
Samples: 91
Max TPM: 87.7
Min TPM: 62.1
MONOCYTES_1
87.7
MONOCYTES_2
87.1
MONOCYTES_3
86.3
MONOCYTES_4
85.5
MONOCYTES_5
85.1
MONOCYTES_6
85.0
MONOCYTES_7
84.7
MONOCYTES_8
84.3
MONOCYTES_9
83.6
MONOCYTES_10
83.5
MONOCYTES_11
83.0
MONOCYTES_12
82.9
MONOCYTES_13
82.7
MONOCYTES_14
82.5
MONOCYTES_15
82.5
MONOCYTES_16
81.6
MONOCYTES_17
81.6
MONOCYTES_18
81.4
MONOCYTES_19
81.3
MONOCYTES_20
81.3
MONOCYTES_21
81.3
MONOCYTES_22
81.1
MONOCYTES_23
80.7
MONOCYTES_24
80.4
MONOCYTES_25
80.3
MONOCYTES_26
80.1
MONOCYTES_27
80.1
MONOCYTES_28
79.7
MONOCYTES_29
79.7
MONOCYTES_30
79.6
MONOCYTES_31
79.3
MONOCYTES_32
79.1
MONOCYTES_33
79.0
MONOCYTES_34
78.9
MONOCYTES_35
78.8
MONOCYTES_36
78.7
MONOCYTES_37
78.6
MONOCYTES_38
78.2
MONOCYTES_39
78.1
MONOCYTES_40
78.1
MONOCYTES_41
77.7
MONOCYTES_42
77.5
MONOCYTES_43
77.5
MONOCYTES_44
77.5
MONOCYTES_45
77.4
MONOCYTES_46
77.3
MONOCYTES_47
77.3
MONOCYTES_48
77.1
MONOCYTES_49
77.1
MONOCYTES_50
76.9
MONOCYTES_51
76.7
MONOCYTES_52
76.6
MONOCYTES_53
76.6
MONOCYTES_54
76.3
MONOCYTES_55
76.2
MONOCYTES_56
76.1
MONOCYTES_57
76.0
MONOCYTES_58
76.0
MONOCYTES_59
76.0
MONOCYTES_60
76.0
MONOCYTES_61
75.6
MONOCYTES_62
75.3
MONOCYTES_63
75.3
MONOCYTES_64
74.8
MONOCYTES_65
74.6
MONOCYTES_66
74.5
MONOCYTES_67
73.8
MONOCYTES_68
73.8
MONOCYTES_69
72.1
MONOCYTES_70
71.9
MONOCYTES_71
71.0
MONOCYTES_72
70.8
MONOCYTES_73
70.6
MONOCYTES_74
70.5
MONOCYTES_75
70.5
MONOCYTES_76
70.5
MONOCYTES_77
70.2
MONOCYTES_78
69.4
MONOCYTES_79
69.3
MONOCYTES_80
68.9
MONOCYTES_81
68.5
MONOCYTES_82
68.5
MONOCYTES_83
68.1
MONOCYTES_84
67.7
MONOCYTES_85
66.9
MONOCYTES_86
66.7
MONOCYTES_87
65.6
MONOCYTES_88
64.4
MONOCYTES_89
63.5
MONOCYTES_90
62.9
MONOCYTES_91
62.1
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Non-classical monocyte TPM: 83.0
Samples: 90
Max TPM: 98.4
Min TPM: 57.2
M2_1
98.4
M2_2
97.0
M2_3
96.6
M2_4
96.3
M2_5
94.9
M2_6
94.7
M2_7
93.5
M2_8
92.8
M2_9
92.6
M2_10
91.9
M2_11
91.6
M2_12
91.3
M2_13
91.2
M2_14
91.1
M2_15
90.7
M2_16
90.4
M2_17
90.4
M2_18
90.3
M2_19
90.3
M2_20
90.3
M2_21
89.5
M2_22
89.4
M2_23
89.3
M2_24
89.2
M2_25
88.9
M2_26
88.6
M2_27
88.2
M2_28
87.8
M2_29
87.7
M2_30
87.3
M2_31
87.3
M2_32
87.2
M2_33
86.7
M2_34
86.1
M2_35
85.8
M2_36
85.7
M2_37
85.7
M2_38
85.6
M2_39
85.6
M2_40
85.5
M2_41
85.3
M2_42
85.2
M2_43
85.1
M2_44
84.8
M2_45
84.7
M2_46
84.4
M2_47
84.4
M2_48
84.1
M2_49
84.1
M2_50
84.0
M2_51
83.6
M2_52
82.5
M2_53
82.5
M2_54
82.4
M2_55
82.4
M2_56
82.2
M2_57
81.9
M2_58
81.5
M2_59
81.4
M2_60
80.8
M2_61
80.8
M2_62
80.4
M2_63
80.4
M2_64
79.8
M2_65
79.8
M2_66
79.5
M2_67
79.0
M2_68
78.4
M2_69
78.1
M2_70
77.9
M2_71
77.7
M2_72
77.6
M2_73
77.2
M2_74
76.2
M2_75
76.0
M2_76
74.5
M2_77
74.2
M2_78
73.7
M2_79
72.1
M2_80
71.4
M2_81
70.6
M2_82
69.5
M2_83
68.6
M2_84
67.8
M2_85
67.6
M2_86
66.3
M2_87
65.6
M2_88
60.5
M2_89
58.4
M2_90
57.2
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