A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
116.8
nTPM
Monaco:
288.7
nTPM
Schmiedel:
125.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
116.8
HPA sample
nTPM
NK-cell nTPM: 116.7
Samples: 6
Max nTPM: 132.4
Min nTPM: 90.5
P10809_1013
90.5
P10809_1033
118.8
P10809_1052
117.7
P10809_1071
118.4
P10809_1093
132.4
P10809_1103
122.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
288.7
Monaco sample
nTPM
NK-cell nTPM: 288.7
Samples: 4
Max nTPM: 344.7
Min nTPM: 245.6
RHH5316_R3683
282.9
RHH5224_R3596
344.7
RHH5253_R3625
281.6
RHH5282_R3654
245.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
125.6
Schmiedel sample id
TPM
NK-cell TPM: 125.6
Samples: 90
Max TPM: 170.0
Min TPM: 86.2
NK_1
170.0
NK_2
168.3
NK_3
165.4
NK_4
161.6
NK_5
161.4
NK_6
158.2
NK_7
155.4
NK_8
155.3
NK_9
152.6
NK_10
152.1
NK_11
151.6
NK_12
151.6
NK_13
151.5
NK_14
150.9
NK_15
150.9
NK_16
150.6
NK_17
149.1
NK_18
148.5
NK_19
147.6
NK_20
146.9
NK_21
146.5
NK_22
145.2
NK_23
144.8
NK_24
144.1
NK_25
143.3
NK_26
142.5
NK_27
141.3
NK_28
135.9
NK_29
135.0
NK_30
134.9
NK_31
134.5
NK_32
133.0
NK_33
131.6
NK_34
130.3
NK_35
129.6
NK_36
128.6
NK_37
128.1
NK_38
127.6
NK_39
125.9
NK_40
125.8
NK_41
125.2
NK_42
125.0
NK_43
124.7
NK_44
123.0
NK_45
122.1
NK_46
121.3
NK_47
121.0
NK_48
120.9
NK_49
120.4
NK_50
119.5
NK_51
118.8
NK_52
118.4
NK_53
118.4
NK_54
118.1
NK_55
117.7
NK_56
117.3
NK_57
115.6
NK_58
115.5
NK_59
114.9
NK_60
114.4
NK_61
114.3
NK_62
113.4
NK_63
112.1
NK_64
111.4
NK_65
111.1
NK_66
110.1
NK_67
109.9
NK_68
109.9
NK_69
108.3
NK_70
108.1
NK_71
106.5
NK_72
106.4
NK_73
106.1
NK_74
105.5
NK_75
105.2
NK_76
105.1
NK_77
102.9
NK_78
102.7
NK_79
100.9
NK_80
99.4
NK_81
98.5
NK_82
98.3
NK_83
96.9
NK_84
96.6
NK_85
96.5
NK_86
96.1
NK_87
95.6
NK_88
93.5
NK_89
92.1
NK_90
86.2
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