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EPB41L1
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  • EPB41L1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:88.3 nTPM
HPA Brain:250.5 nTPM
GTEx:88.3 nTPM
FANTOM5:181.7 Scaled Tags Per Million
Pig:155.8 nTPM
Mouse:168.8 nTPM
Allen mouse:12.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

250.5
Sample id Sample description nTPM
Amygdala
nTPM: 182.3
2517 Female, age 94, left hemisphere 209.1
1987 Female, age 91, left hemisphere 205.0
2695 Female, age 67, right hemisphere 179.8
2514 Male, age 75, right hemisphere 164.6
2814 Male, age 76, right hemisphere 152.8
Basal amygdala
nTPM: 250.5
2243 Female, age 91, right hemisphere 293.5
2685 Female, age 94, left hemisphere 279.2
2110 Male, age 80, left hemisphere 268.1
2827 Female, age 67, right hemisphere 251.2
2609 Male, age 75, right hemisphere 231.4
1955 Male, age 76, both hemispheres 179.8
Central amygdala
nTPM: 231.3
2826 Female, age 94, left hemisphere 287.1
2239 Male, age 80, left hemisphere 258.9
2701 Female, age 91, right hemisphere 238.4
2515 Male, age 75, right hemisphere 217.6
1905 Male, age 76, both hemispheres 154.4
Corticomedial amygdala
nTPM: 237.5
2829 Male, age 80, left hemisphere 288.1
2535 Female, age 67, right hemisphere 263.7
2242 Female, age 91, right hemisphere 263.3
2429 Female, age 94, left hemisphere 235.2
2428 Male, age 75, right hemisphere 194.3
2240 Male, age 76, both hemispheres 180.2
Lateral amygdala
nTPM: 224.5
2534 Female, age 94, left hemisphere 281.6
2256 Male, age 80, left hemisphere 247.4
2255 Female, age 91, right hemisphere 226.5
2830 Female, age 67, right hemisphere 215.5
1883 Male, age 76, both hemispheres 198.9
2516 Male, age 75, right hemisphere 177.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

88.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 88.3
Samples: 181

Max nTPM: 180.4
Min nTPM: 31.9
Std nTPM: 30.4
Median nTPM: 87.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 180.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 167.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 158.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 150.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 147.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 145.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 144.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 144.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 141.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 138.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 136.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 136.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 136.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 135.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 134.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 134.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 133.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 133.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 133.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 130.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 129.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 127.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 127.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 125.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 125.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 125.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 124.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 123.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 122.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 121.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 120.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 119.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 119.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 118.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 115.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 115.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 114.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 114.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 111.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 110.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 109.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 108.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 108.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 107.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 107.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 107.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 107.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 106.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 105.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 105.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 104.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 104.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 104.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 103.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 103.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 101.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 101.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 100.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 100.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 100.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 100.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 99.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 99.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 98.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 97.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 97.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 97.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 97.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 96.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 95.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 95.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 94.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 94.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 93.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 93.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 93.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 92.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 92.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 91.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 91.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 91.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 91.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 91.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 91.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 90.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 90.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 89.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 88.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 87.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 87.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 87.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 87.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 87.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 86.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 86.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 85.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 85.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 84.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 83.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 82.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 82.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 82.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 81.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 81.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 80.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 80.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 79.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 79.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 79.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 79.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 78.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 78.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 78.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 78.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 77.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 76.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 76.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 74.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 73.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 72.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 72.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 72.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 70.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 70.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 70.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 69.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 68.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 67.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 67.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 67.0
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 66.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 66.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 66.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 65.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 65.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 64.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 64.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 62.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 62.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 61.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 61.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 60.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 60.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 60.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 59.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 58.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 58.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 57.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 57.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 57.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 56.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 56.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 55.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 55.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 54.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 53.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 52.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 52.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 51.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 51.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 50.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 50.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 49.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 49.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 47.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 46.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 45.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 44.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 44.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 44.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 43.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 42.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 42.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 42.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 39.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 38.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 38.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 34.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 33.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 33.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 31.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

181.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 181.7
FF:10151-102I7 76 years, female 181.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

155.8
Pig sample Sample description nTPM
Amygdala
nTPM: 155.8
Samples: 4

Max nTPM: 195.4
Min nTPM: 124.2
Sample A Female 195.4
Sample B Female 124.2
Sample C Male 151.0
Sample D Male 152.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

168.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 168.8
Samples: 4

Max nTPM: 200.3
Min nTPM: 151.3
Sample A Male 151.3
Sample B Male 163.3
Sample C Female 200.3
Sample D Female 160.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

12.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.7
74047777 Antisense, RP_051214_02_A02, Mouse strain C57BL/6J (56 days, male) 20.8
68203494 Antisense, RP_041208_01_D02, Mouse strain C57BL/6J (56 days, male) 19.0
70795892 Antisense, RP_050712_02_B09, Mouse strain C57BL/6J (56 days, male) 7.5
74750065 Antisense, RP_060220_05_F07, Mouse strain C57BL/6J (56 days, male) 3.3

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