A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3476.2
nTPM
Monaco:
1370.5
nTPM
Schmiedel:
207.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3476.2
HPA sample
nTPM
Memory B-cell nTPM: 3476.2
Samples: 6
Max nTPM: 4375.2
Min nTPM: 3078.5
P10809_1017
3078.5
P10809_1025
3477.8
P10809_1044
4375.2
P10809_1063
3263.5
P10809_1092
3232.8
P10809_1105
3429.3
Naive B-cell nTPM: 3129.4
Samples: 6
Max nTPM: 5020.0
Min nTPM: 2180.6
P10809_1011
2180.6
P10809_1029
2852.4
P10809_1048
5020.0
P10809_1067
2718.5
P10809_1091
2828.1
P10809_1104
3177.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1370.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 1279.1
Samples: 4
Max nTPM: 1886.8
Min nTPM: 865.9
RHH5310_R3677
1477.7
RHH5218_R3590
886.2
RHH5247_R3619
1886.8
RHH5276_R3648
865.9
Naive B-cell nTPM: 1112.1
Samples: 4
Max nTPM: 1394.8
Min nTPM: 910.4
RHH5308_R3675
1394.8
RHH5216_R3588
1110.8
RHH5245_R3617
1032.3
RHH5274_R3646
910.4
Non-switched memory B-cell nTPM: 1238.4
Samples: 4
Max nTPM: 1511.5
Min nTPM: 896.4
RHH5309_R3676
1435.9
RHH5217_R3589
1109.7
RHH5246_R3618
1511.5
RHH5275_R3647
896.4
Plasmablast nTPM: 1079.2
Samples: 4
Max nTPM: 1313.6
Min nTPM: 864.0
RHH5312_R3679
1092.3
RHH5220_R3592
1046.7
RHH5249_R3621
1313.6
RHH5278_R3650
864.0
Switched memory B-cell nTPM: 1370.6
Samples: 4
Max nTPM: 2055.1
Min nTPM: 803.6
RHH5311_R3678
2055.1
RHH5219_R3591
1582.2
RHH5248_R3620
1041.3
RHH5277_R3649
803.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
207.7
Schmiedel sample id
TPM
Naive B-cell TPM: 207.7
Samples: 91
Max TPM: 252.2
Min TPM: 110.6
B_CELL_NAIVE_1
252.2
B_CELL_NAIVE_2
247.2
B_CELL_NAIVE_3
242.9
B_CELL_NAIVE_4
242.4
B_CELL_NAIVE_5
240.9
B_CELL_NAIVE_6
239.3
B_CELL_NAIVE_7
238.1
B_CELL_NAIVE_8
237.6
B_CELL_NAIVE_9
233.2
B_CELL_NAIVE_10
230.9
B_CELL_NAIVE_11
230.3
B_CELL_NAIVE_12
228.1
B_CELL_NAIVE_13
226.7
B_CELL_NAIVE_14
226.6
B_CELL_NAIVE_15
226.5
B_CELL_NAIVE_16
226.0
B_CELL_NAIVE_17
225.9
B_CELL_NAIVE_18
225.2
B_CELL_NAIVE_19
225.0
B_CELL_NAIVE_20
224.0
B_CELL_NAIVE_21
223.8
B_CELL_NAIVE_22
223.6
B_CELL_NAIVE_23
223.4
B_CELL_NAIVE_24
222.9
B_CELL_NAIVE_25
222.6
B_CELL_NAIVE_26
220.6
B_CELL_NAIVE_27
220.5
B_CELL_NAIVE_28
219.8
B_CELL_NAIVE_29
219.8
B_CELL_NAIVE_30
219.1
B_CELL_NAIVE_31
217.7
B_CELL_NAIVE_32
217.2
B_CELL_NAIVE_33
216.3
B_CELL_NAIVE_34
215.9
B_CELL_NAIVE_35
214.8
B_CELL_NAIVE_36
214.5
B_CELL_NAIVE_37
214.5
B_CELL_NAIVE_38
213.5
B_CELL_NAIVE_39
212.8
B_CELL_NAIVE_40
212.7
B_CELL_NAIVE_41
212.2
B_CELL_NAIVE_42
211.3
B_CELL_NAIVE_43
209.5
B_CELL_NAIVE_44
209.5
B_CELL_NAIVE_45
209.4
B_CELL_NAIVE_46
209.2
B_CELL_NAIVE_47
207.6
B_CELL_NAIVE_48
207.4
B_CELL_NAIVE_49
206.8
B_CELL_NAIVE_50
206.6
B_CELL_NAIVE_51
205.6
B_CELL_NAIVE_52
204.8
B_CELL_NAIVE_53
204.4
B_CELL_NAIVE_54
203.8
B_CELL_NAIVE_55
202.7
B_CELL_NAIVE_56
201.9
B_CELL_NAIVE_57
199.9
B_CELL_NAIVE_58
199.4
B_CELL_NAIVE_59
199.0
B_CELL_NAIVE_60
198.7
B_CELL_NAIVE_61
197.2
B_CELL_NAIVE_62
197.1
B_CELL_NAIVE_63
197.0
B_CELL_NAIVE_64
196.9
B_CELL_NAIVE_65
196.4
B_CELL_NAIVE_66
195.2
B_CELL_NAIVE_67
194.8
B_CELL_NAIVE_68
194.7
B_CELL_NAIVE_69
194.7
B_CELL_NAIVE_70
194.4
B_CELL_NAIVE_71
193.8
B_CELL_NAIVE_72
193.5
B_CELL_NAIVE_73
192.1
B_CELL_NAIVE_74
191.5
B_CELL_NAIVE_75
190.7
B_CELL_NAIVE_76
190.3
B_CELL_NAIVE_77
189.2
B_CELL_NAIVE_78
188.7
B_CELL_NAIVE_79
188.0
B_CELL_NAIVE_80
187.4
B_CELL_NAIVE_81
186.7
B_CELL_NAIVE_82
185.0
B_CELL_NAIVE_83
183.7
B_CELL_NAIVE_84
183.4
B_CELL_NAIVE_85
182.7
B_CELL_NAIVE_86
179.7
B_CELL_NAIVE_87
177.7
B_CELL_NAIVE_88
170.6
B_CELL_NAIVE_89
167.7
B_CELL_NAIVE_90
166.4
B_CELL_NAIVE_91
110.6
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