A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2263.7
nTPM
Monaco:
860.9
nTPM
Schmiedel:
149.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2263.7
HPA sample
nTPM
Classical monocyte nTPM: 2263.7
Samples: 6
Max nTPM: 4275.6
Min nTPM: 1304.2
P10809_1003
4275.6
P10809_1020
1885.6
P10809_1039
2256.1
P10809_1058
1605.2
P10809_1080
1304.2
P10809_1107
2255.4
Intermediate monocyte nTPM: 1852.8
Samples: 6
Max nTPM: 2582.2
Min nTPM: 1253.7
P10809_1004
1627.6
P10809_1023
2168.2
P10809_1042
1769.9
P10809_1061
1715.5
P10809_1081
1253.7
P10809_1108
2582.2
Non-classical monocyte nTPM: 1695.8
Samples: 5
Max nTPM: 2161.2
Min nTPM: 1233.4
P10809_1005
1785.9
P10809_1053
1578.4
P10809_1072
1720.1
P10809_1082
1233.4
P10809_1109
2161.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
860.9
Monaco sample
nTPM
Classical monocyte nTPM: 860.9
Samples: 4
Max nTPM: 1161.6
Min nTPM: 547.8
RHH5313_R3680
706.3
RHH5221_R3593
547.8
RHH5250_R3622
1161.6
RHH5279_R3651
1027.9
Intermediate monocyte nTPM: 815.5
Samples: 4
Max nTPM: 976.7
Min nTPM: 584.9
RHH5314_R3681
957.7
RHH5222_R3594
584.9
RHH5251_R3623
742.7
RHH5280_R3652
976.7
Non-classical monocyte nTPM: 568.6
Samples: 4
Max nTPM: 698.1
Min nTPM: 427.4
RHH5315_R3682
612.1
RHH5223_R3595
427.4
RHH5252_R3624
536.8
RHH5281_R3653
698.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
149.0
Schmiedel sample id
TPM
Classical monocyte TPM: 149.0
Samples: 91
Max TPM: 193.7
Min TPM: 115.0
MONOCYTES_1
193.7
MONOCYTES_2
188.9
MONOCYTES_3
180.8
MONOCYTES_4
175.4
MONOCYTES_5
171.9
MONOCYTES_6
170.3
MONOCYTES_7
168.9
MONOCYTES_8
168.6
MONOCYTES_9
167.1
MONOCYTES_10
166.7
MONOCYTES_11
166.6
MONOCYTES_12
166.1
MONOCYTES_13
162.5
MONOCYTES_14
162.4
MONOCYTES_15
161.8
MONOCYTES_16
161.6
MONOCYTES_17
161.3
MONOCYTES_18
160.7
MONOCYTES_19
160.6
MONOCYTES_20
160.6
MONOCYTES_21
159.5
MONOCYTES_22
158.9
MONOCYTES_23
158.1
MONOCYTES_24
157.3
MONOCYTES_25
156.7
MONOCYTES_26
156.7
MONOCYTES_27
156.5
MONOCYTES_28
156.5
MONOCYTES_29
156.4
MONOCYTES_30
156.3
MONOCYTES_31
155.5
MONOCYTES_32
154.6
MONOCYTES_33
154.3
MONOCYTES_34
154.3
MONOCYTES_35
154.3
MONOCYTES_36
153.6
MONOCYTES_37
153.3
MONOCYTES_38
153.1
MONOCYTES_39
152.8
MONOCYTES_40
152.7
MONOCYTES_41
151.9
MONOCYTES_42
151.7
MONOCYTES_43
150.8
MONOCYTES_44
150.8
MONOCYTES_45
150.5
MONOCYTES_46
149.9
MONOCYTES_47
148.9
MONOCYTES_48
148.4
MONOCYTES_49
148.1
MONOCYTES_50
147.6
MONOCYTES_51
147.2
MONOCYTES_52
146.8
MONOCYTES_53
146.5
MONOCYTES_54
146.2
MONOCYTES_55
146.1
MONOCYTES_56
145.8
MONOCYTES_57
145.0
MONOCYTES_58
144.9
MONOCYTES_59
144.1
MONOCYTES_60
144.1
MONOCYTES_61
144.1
MONOCYTES_62
143.6
MONOCYTES_63
143.1
MONOCYTES_64
142.9
MONOCYTES_65
142.5
MONOCYTES_66
142.0
MONOCYTES_67
141.5
MONOCYTES_68
141.1
MONOCYTES_69
140.7
MONOCYTES_70
140.3
MONOCYTES_71
140.0
MONOCYTES_72
139.0
MONOCYTES_73
137.1
MONOCYTES_74
136.9
MONOCYTES_75
134.6
MONOCYTES_76
134.0
MONOCYTES_77
133.9
MONOCYTES_78
133.0
MONOCYTES_79
132.6
MONOCYTES_80
132.1
MONOCYTES_81
130.7
MONOCYTES_82
130.5
MONOCYTES_83
125.3
MONOCYTES_84
123.2
MONOCYTES_85
122.1
MONOCYTES_86
121.3
MONOCYTES_87
119.6
MONOCYTES_88
118.0
MONOCYTES_89
117.0
MONOCYTES_90
115.3
MONOCYTES_91
115.0
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Non-classical monocyte TPM: 134.8
Samples: 90
Max TPM: 170.9
Min TPM: 107.6
M2_1
170.9
M2_2
170.9
M2_3
169.8
M2_4
160.6
M2_5
156.5
M2_6
156.2
M2_7
153.3
M2_8
153.2
M2_9
153.1
M2_10
151.4
M2_11
151.0
M2_12
150.7
M2_13
150.6
M2_14
150.1
M2_15
149.7
M2_16
149.3
M2_17
146.8
M2_18
146.0
M2_19
144.9
M2_20
144.3
M2_21
144.2
M2_22
144.0
M2_23
143.2
M2_24
142.8
M2_25
142.5
M2_26
142.0
M2_27
141.8
M2_28
141.2
M2_29
140.8
M2_30
139.7
M2_31
139.5
M2_32
139.2
M2_33
138.6
M2_34
137.9
M2_35
137.4
M2_36
136.4
M2_37
135.5
M2_38
135.4
M2_39
135.0
M2_40
134.8
M2_41
134.6
M2_42
134.1
M2_43
133.9
M2_44
133.5
M2_45
133.4
M2_46
133.3
M2_47
132.7
M2_48
132.3
M2_49
132.2
M2_50
131.5
M2_51
131.4
M2_52
131.3
M2_53
130.8
M2_54
130.6
M2_55
130.4
M2_56
130.3
M2_57
130.3
M2_58
130.1
M2_59
129.8
M2_60
129.6
M2_61
129.5
M2_62
129.0
M2_63
128.9
M2_64
128.6
M2_65
127.3
M2_66
127.1
M2_67
126.6
M2_68
126.5
M2_69
126.2
M2_70
125.9
M2_71
125.8
M2_72
125.6
M2_73
124.1
M2_74
124.0
M2_75
123.5
M2_76
122.7
M2_77
122.1
M2_78
121.7
M2_79
121.2
M2_80
121.1
M2_81
116.5
M2_82
115.5
M2_83
115.0
M2_84
114.3
M2_85
111.2
M2_86
110.1
M2_87
109.6
M2_88
108.5
M2_89
108.3
M2_90
107.6
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