A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2847.3
nTPM
Monaco:
493.5
nTPM
Schmiedel:
156.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2847.3
HPA sample
nTPM
NK-cell nTPM: 2847.3
Samples: 6
Max nTPM: 3388.5
Min nTPM: 2484.7
P10809_1013
2496.2
P10809_1033
2839.8
P10809_1052
2484.7
P10809_1071
3237.7
P10809_1093
2637.0
P10809_1103
3388.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
493.5
Monaco sample
nTPM
NK-cell nTPM: 493.5
Samples: 4
Max nTPM: 552.5
Min nTPM: 362.3
RHH5316_R3683
552.5
RHH5224_R3596
514.5
RHH5253_R3625
362.3
RHH5282_R3654
544.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
156.5
Schmiedel sample id
TPM
NK-cell TPM: 156.5
Samples: 90
Max TPM: 224.1
Min TPM: 113.8
NK_1
224.1
NK_2
211.0
NK_3
209.3
NK_4
208.0
NK_5
193.4
NK_6
193.4
NK_7
192.9
NK_8
190.7
NK_9
188.8
NK_10
186.6
NK_11
185.9
NK_12
182.7
NK_13
182.1
NK_14
180.5
NK_15
178.8
NK_16
177.1
NK_17
176.6
NK_18
175.0
NK_19
174.7
NK_20
174.5
NK_21
174.0
NK_22
173.9
NK_23
173.6
NK_24
173.1
NK_25
172.7
NK_26
169.3
NK_27
168.8
NK_28
166.7
NK_29
165.8
NK_30
165.3
NK_31
163.5
NK_32
162.8
NK_33
162.0
NK_34
161.7
NK_35
160.5
NK_36
159.8
NK_37
159.6
NK_38
159.2
NK_39
159.0
NK_40
158.7
NK_41
157.5
NK_42
155.9
NK_43
155.9
NK_44
155.4
NK_45
154.9
NK_46
153.8
NK_47
153.6
NK_48
153.2
NK_49
150.9
NK_50
150.9
NK_51
150.5
NK_52
150.0
NK_53
149.8
NK_54
149.1
NK_55
148.9
NK_56
148.7
NK_57
147.5
NK_58
147.5
NK_59
146.2
NK_60
145.9
NK_61
145.1
NK_62
144.9
NK_63
144.5
NK_64
144.4
NK_65
144.1
NK_66
143.5
NK_67
140.2
NK_68
140.0
NK_69
139.4
NK_70
138.3
NK_71
137.8
NK_72
137.6
NK_73
136.2
NK_74
135.8
NK_75
133.8
NK_76
133.5
NK_77
133.1
NK_78
130.1
NK_79
129.1
NK_80
128.8
NK_81
126.7
NK_82
125.3
NK_83
124.9
NK_84
123.5
NK_85
119.6
NK_86
118.7
NK_87
117.0
NK_88
114.9
NK_89
114.8
NK_90
113.8
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