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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:92.7 nTPM
HPA Brain:87.3 nTPM
GTEx:92.7 nTPM
FANTOM5:29.4 Scaled Tags Per Million
Pig:5.0 nTPM
Mouse:29.9 nTPM
Allen mouse:1.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.3
Sample id Sample description nTPM
Amygdala
nTPM: 87.3
2814 Male, age 76, right hemisphere 104.3
2514 Male, age 75, right hemisphere 89.3
1987 Female, age 91, left hemisphere 85.9
2695 Female, age 67, right hemisphere 84.3
2517 Female, age 94, left hemisphere 72.6
Basal amygdala
nTPM: 70.5
1955 Male, age 76, both hemispheres 83.7
2609 Male, age 75, right hemisphere 79.0
2110 Male, age 80, left hemisphere 68.7
2243 Female, age 91, right hemisphere 68.3
2685 Female, age 94, left hemisphere 66.2
2827 Female, age 67, right hemisphere 57.2
Central amygdala
nTPM: 76.5
1905 Male, age 76, both hemispheres 96.7
2515 Male, age 75, right hemisphere 75.1
2826 Female, age 94, left hemisphere 74.5
2701 Female, age 91, right hemisphere 70.7
2239 Male, age 80, left hemisphere 65.7
Corticomedial amygdala
nTPM: 68.9
2429 Female, age 94, left hemisphere 76.5
2240 Male, age 76, both hemispheres 76.4
2428 Male, age 75, right hemisphere 73.8
2829 Male, age 80, left hemisphere 69.6
2242 Female, age 91, right hemisphere 65.8
2535 Female, age 67, right hemisphere 51.3
Lateral amygdala
nTPM: 74.7
1883 Male, age 76, both hemispheres 90.7
2516 Male, age 75, right hemisphere 82.0
2534 Female, age 94, left hemisphere 80.8
2830 Female, age 67, right hemisphere 71.3
2256 Male, age 80, left hemisphere 63.1
2255 Female, age 91, right hemisphere 60.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 92.7
Samples: 181

Max nTPM: 196.9
Min nTPM: 61.7
Std nTPM: 20.5
Median nTPM: 88.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 196.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 179.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 164.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 149.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 144.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 143.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 141.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 137.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 133.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 132.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 131.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 128.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 126.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 126.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 123.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 122.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 120.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 118.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 117.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 117.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 113.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 112.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 112.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 111.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 110.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 109.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 109.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 109.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 108.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 108.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 108.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 108.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 107.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 105.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 105.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 104.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 104.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 102.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 102.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 101.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 100.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 100.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 99.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 99.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 99.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 99.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 98.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 98.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 97.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 97.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 97.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 96.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 96.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 96.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 96.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 96.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 95.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 94.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 94.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 94.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 94.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 93.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 93.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 93.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 93.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 93.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 93.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 93.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 92.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 92.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 92.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 92.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 92.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 91.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 91.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 91.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 90.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 90.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 90.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 89.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 89.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 89.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 89.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 89.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 88.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 88.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 88.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 88.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 88.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 88.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 88.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 88.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 87.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 87.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 87.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 86.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 86.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 86.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 86.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 86.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 86.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 86.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 86.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 86.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 86.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 86.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 85.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 85.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 85.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 85.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 85.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 85.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 84.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 84.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 84.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 84.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 83.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 83.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 83.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 83.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 82.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 82.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 82.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 82.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 81.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 81.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 81.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 81.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 81.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 80.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 80.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 80.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 80.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 80.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 80.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 79.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 79.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 79.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 79.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 79.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 79.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 79.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 78.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 78.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 78.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 78.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 78.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 78.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 77.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 77.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 77.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 77.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 76.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 76.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 76.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 75.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 75.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 74.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 74.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 74.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 74.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 74.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 73.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 72.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 71.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 71.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 70.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 69.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 69.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 68.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 68.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 68.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 68.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 67.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 66.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 66.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 66.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 65.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 62.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 62.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 61.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

29.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 29.4
FF:10151-102I7 76 years, female 29.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5.0
Pig sample Sample description nTPM
Amygdala
nTPM: 5.0
Samples: 4

Max nTPM: 8.0
Min nTPM: 2.2
Sample A Female 2.2
Sample B Female 4.8
Sample C Male 8.0
Sample D Male 5.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

29.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 29.9
Samples: 4

Max nTPM: 32.0
Min nTPM: 27.3
Sample A Male 32.0
Sample B Male 28.3
Sample C Female 31.8
Sample D Female 27.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.3
70429130 Antisense, RP_050614_01_A10, Mouse strain C57BL/6J (56 days, male) 1.3

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