MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:115.3 nTPM
HPA Brain:97.7 nTPM
GTEx:115.3 nTPM
FANTOM5:34.4 Scaled Tags Per Million
Pig:3.3 nTPM
Mouse:35.9 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 97.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 86.3
1870 Female, age 42, unknown 104.2
2411 Female, age 72, unknown 93.6
2019 Male, age 18, unknown 93.4
1830 Male, age 51, unknown 92.2
1833 Male, age 53, unknown 91.9
1827 Male, age 72, unknown 85.5
2219 Male, age 76, both hemispheres 79.0
2586 Male, age 75, left hemisphere 76.2
2828 Female, age 72, unknown 74.1
2666 Male, age 74, left hemisphere 73.2
Dorsal raphe nucleus
nTPM: 90.8
2750 Male, age 76, both hemispheres 103.1
2298 Female, age 72, unknown 89.6
2016 Female, age 72, unknown 88.5
2047 Male, age 72, unknown 86.8
1828 Male, age 53, unknown 86.2
Inferior colliculus
nTPM: 81.4
2097 Female, age 72, unknown 88.9
1890 Male, age 53, unknown 83.0
1848 Female, age 42, unknown 79.1
2849 Male, age 72, unknown 74.6
Median raphe nucleus
nTPM: 97.7
2220 Male, age 76, midline 97.7
Periaquaductal grey, anterior
nTPM: 87.8
1947 Male, age 18, unknown 101.6
2502 Female, age 75, unknown 84.6
1795 Male, age 51, unknown 77.2
Periaquaductal grey, dorsal
nTPM: 76.8
2850 Male, age 76, both hemispheres 82.2
1831 Male, age 72, unknown 77.2
2464 Female, age 72, unknown 76.1
1840 Male, age 53, unknown 71.8
Periaquaductal grey, lateral
nTPM: 80.2
2272 Male, age 74, both hemispheres 86.5
2053 Male, age 18, unknown 81.8
2140 Male, age 76, both hemispheres 72.3
Pretectal area
nTPM: 89.8
1944 Female, age 72, unknown 101.8
1817 Female, age 42, unknown 100.2
2007 Male, age 72, unknown 96.6
1815 Male, age 53, unknown 95.8
2667 Female, age 75, unknown 95.4
2224 Female, age 72, unknown 90.2
1816 Male, age 51, unknown 88.3
2273 Male, age 74, both hemispheres 87.1
2316 Male, age 76, right hemisphere 78.7
2407 Male, age 75, both hemispheres 77.9
2825 Male, age 18, unknown 76.2
Red nucleus
nTPM: 97.6
1821 Female, age 72, unknown 116.3
1865 Male, age 51, unknown 109.8
1904 Male, age 53, unknown 108.7
1954 Female, age 42, unknown 103.8
2823 Male, age 76, right hemisphere 102.4
2503 Female, age 72, unknown 97.9
2725 Female, age 75, unknown 94.2
2769 Male, age 72, unknown 93.5
2785 Male, age 18, unknown 92.0
2227 Male, age 72, unknown 90.7
2588 Male, age 74, left hemisphere 81.8
2584 Male, age 75, left hemisphere 80.2
Substantia nigra
nTPM: 96.6
1916 Female, age 42, unknown 110.6
2241 Male, age 72, unknown 106.2
1851 Male, age 51, unknown 105.4
1889 Female, age 72, unknown 104.9
1941 Male, age 53, unknown 97.6
2699 Male, age 18, unknown 94.4
2590 Female, age 75, unknown 89.2
2583 Male, age 75, right hemisphere 88.8
2409 Female, age 72, unknown 86.7
2665 Male, age 74, both hemispheres 82.4
Superior colliculus
nTPM: 86.5
1895 Male, age 76, right hemisphere 97.8
2668 Female, age 75, unknown 92.4
1913 Female, age 42, unknown 92.3
2587 Male, age 74, left hemisphere 91.7
1995 Male, age 72, unknown 91.1
2087 Female, age 72, unknown 84.9
2261 Male, age 18, unknown 83.7
1839 Male, age 51, unknown 79.3
1796 Male, age 53, unknown 78.9
2664 Male, age 75, both hemispheres 72.8
Ventral tegmental area
nTPM: 93.6
2218 Male, age 76, both hemispheres 102.4
2410 Female, age 72, unknown 100.3
1915 Female, age 42, unknown 96.2
2223 Female, age 72, unknown 90.0
1942 Male, age 51, unknown 87.0
2021 Male, age 53, unknown 85.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 115.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 115.3
Samples: 183

Max nTPM: 223.4
Min nTPM: 45.9
Std nTPM: 24.0
Median nTPM: 115.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 223.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 206.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 188.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 170.4
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 164.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 156.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 155.7
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 153.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 152.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 150.8
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 149.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 34.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.4
FF:10158-103A5 76 years, female 34.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 3.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2.4
Samples: 4

Max nTPM: 3.7
Min nTPM: 1.3
Sample A Female 1.3
Sample B Female 2.4
Sample C Male 2.2
Sample D Male 3.7
Midbrain
nTPM: 2.6
Samples: 4

Max nTPM: 3.6
Min nTPM: 0.9
Sample A Female 0.9
Sample B Female 3.6
Sample C Male 3.1
Sample D Male 2.7
Periaqueductal gray
nTPM: 3.2
Samples: 3

Max nTPM: 5.2
Min nTPM: 1.5
Sample B Female 5.2
Sample C Male 1.5
Sample D Male 3.0
Superior colliculi
nTPM: 1.8
Samples: 4

Max nTPM: 3.4
Min nTPM: 0.7
Sample A Female 0.7
Sample B Female 1.2
Sample C Male 3.4
Sample D Male 2.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 35.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.9
Samples: 4

Max nTPM: 38.4
Min nTPM: 34.0
Sample A Male 34.5
Sample B Male 38.4
Sample C Female 34.0
Sample D Female 36.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
70429130 Antisense, RP_050614_01_A10, Mouse strain C57BL/6J (56 days, male) 0.7

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