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BETA
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  • RPLP0
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:3726.2 nTPM
Monaco:3918.5 nTPM
Schmiedel:552.8 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

3726.2
HPA sample nTPM
Memory B-cell
nTPM: 3726.2
Samples: 6

Max nTPM: 4751.3
Min nTPM: 3103.3
P10809_1017 3103.3
P10809_1025 3919.2
P10809_1044 4751.3
P10809_1063 3472.4
P10809_1092 3600.2
P10809_1105 3510.7
Naive B-cell
nTPM: 3470.9
Samples: 6

Max nTPM: 5043.1
Min nTPM: 2715.5
P10809_1011 2715.5
P10809_1029 3525.9
P10809_1048 5043.1
P10809_1067 2928.9
P10809_1091 3086.5
P10809_1104 3525.6

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

3918.5
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 2063.2
Samples: 4

Max nTPM: 3208.1
Min nTPM: 1101.9
RHH5310_R3677 3208.1
RHH5218_R3590 1661.4
RHH5247_R3619 2281.5
RHH5276_R3648 1101.9
Naive B-cell
nTPM: 1890.3
Samples: 4

Max nTPM: 2363.7
Min nTPM: 1237.7
RHH5308_R3675 2363.7
RHH5216_R3588 2337.0
RHH5245_R3617 1237.7
RHH5274_R3646 1622.9
Non-switched memory B-cell
nTPM: 2202.0
Samples: 4

Max nTPM: 2873.5
Min nTPM: 1191.8
RHH5309_R3676 2873.5
RHH5217_R3589 2077.7
RHH5246_R3618 2665.1
RHH5275_R3647 1191.8
Plasmablast
nTPM: 3918.5
Samples: 4

Max nTPM: 4786.5
Min nTPM: 2551.8
RHH5312_R3679 3914.7
RHH5220_R3592 4420.8
RHH5249_R3621 4786.5
RHH5278_R3650 2551.8
Switched memory B-cell
nTPM: 2437.0
Samples: 4

Max nTPM: 3780.4
Min nTPM: 1323.4
RHH5311_R3678 3780.4
RHH5219_R3591 2620.0
RHH5248_R3620 2024.1
RHH5277_R3649 1323.4

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

552.8
Schmiedel sample id TPM
Naive B-cell
TPM: 552.8
Samples: 91

Max TPM: 838.0
Min TPM: 239.5
B_CELL_NAIVE_1 838.0
B_CELL_NAIVE_2 721.5
B_CELL_NAIVE_3 715.5
B_CELL_NAIVE_4 712.9
B_CELL_NAIVE_5 711.2
B_CELL_NAIVE_6 708.1
B_CELL_NAIVE_7 697.6
B_CELL_NAIVE_8 684.3
B_CELL_NAIVE_9 683.0
B_CELL_NAIVE_10 677.5
B_CELL_NAIVE_11 667.3
B_CELL_NAIVE_12 664.7
B_CELL_NAIVE_13 660.8
B_CELL_NAIVE_14 658.6
B_CELL_NAIVE_15 658.0
B_CELL_NAIVE_16 655.0
B_CELL_NAIVE_17 653.3
B_CELL_NAIVE_18 644.7
B_CELL_NAIVE_19 643.6
B_CELL_NAIVE_20 640.6
B_CELL_NAIVE_21 637.0
B_CELL_NAIVE_22 636.2
B_CELL_NAIVE_23 632.8
B_CELL_NAIVE_24 631.0
B_CELL_NAIVE_25 630.1
B_CELL_NAIVE_26 629.3
B_CELL_NAIVE_27 626.3
B_CELL_NAIVE_28 621.8
B_CELL_NAIVE_29 621.3
B_CELL_NAIVE_30 617.8
B_CELL_NAIVE_31 617.8
B_CELL_NAIVE_32 615.5
B_CELL_NAIVE_33 615.3
B_CELL_NAIVE_34 614.3
B_CELL_NAIVE_35 612.4
B_CELL_NAIVE_36 611.9
B_CELL_NAIVE_37 609.1
B_CELL_NAIVE_38 594.9
B_CELL_NAIVE_39 594.7
B_CELL_NAIVE_40 590.1
B_CELL_NAIVE_41 589.7
B_CELL_NAIVE_42 588.3
B_CELL_NAIVE_43 580.1
B_CELL_NAIVE_44 578.8
B_CELL_NAIVE_45 576.3
B_CELL_NAIVE_46 570.5
B_CELL_NAIVE_47 567.3
B_CELL_NAIVE_48 566.8
B_CELL_NAIVE_49 564.5
B_CELL_NAIVE_50 559.6
B_CELL_NAIVE_51 558.1
B_CELL_NAIVE_52 556.0
B_CELL_NAIVE_53 555.5
B_CELL_NAIVE_54 547.3
B_CELL_NAIVE_55 547.1
B_CELL_NAIVE_56 543.3
B_CELL_NAIVE_57 542.4
B_CELL_NAIVE_58 533.8
B_CELL_NAIVE_59 530.8
B_CELL_NAIVE_60 530.0
B_CELL_NAIVE_61 526.4
B_CELL_NAIVE_62 525.3
B_CELL_NAIVE_63 520.4
B_CELL_NAIVE_64 519.4
B_CELL_NAIVE_65 512.5
B_CELL_NAIVE_66 511.5
B_CELL_NAIVE_67 509.0
B_CELL_NAIVE_68 508.9
B_CELL_NAIVE_69 502.1
B_CELL_NAIVE_70 493.7
B_CELL_NAIVE_71 488.6
B_CELL_NAIVE_72 484.8
B_CELL_NAIVE_73 483.3
B_CELL_NAIVE_74 474.5
B_CELL_NAIVE_75 470.5
B_CELL_NAIVE_76 460.7
B_CELL_NAIVE_77 436.4
B_CELL_NAIVE_78 428.3
B_CELL_NAIVE_79 398.5
B_CELL_NAIVE_80 395.7
B_CELL_NAIVE_81 393.0
B_CELL_NAIVE_82 391.4
B_CELL_NAIVE_83 380.0
B_CELL_NAIVE_84 340.8
B_CELL_NAIVE_85 308.2
B_CELL_NAIVE_86 298.5
B_CELL_NAIVE_87 275.7
B_CELL_NAIVE_88 273.4
B_CELL_NAIVE_89 262.0
B_CELL_NAIVE_90 249.7
B_CELL_NAIVE_91 239.5
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