A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3726.2
nTPM
Monaco:
3918.5
nTPM
Schmiedel:
552.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3726.2
HPA sample
nTPM
Memory B-cell nTPM: 3726.2
Samples: 6
Max nTPM: 4751.3
Min nTPM: 3103.3
P10809_1017
3103.3
P10809_1025
3919.2
P10809_1044
4751.3
P10809_1063
3472.4
P10809_1092
3600.2
P10809_1105
3510.7
Naive B-cell nTPM: 3470.9
Samples: 6
Max nTPM: 5043.1
Min nTPM: 2715.5
P10809_1011
2715.5
P10809_1029
3525.9
P10809_1048
5043.1
P10809_1067
2928.9
P10809_1091
3086.5
P10809_1104
3525.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3918.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 2063.2
Samples: 4
Max nTPM: 3208.1
Min nTPM: 1101.9
RHH5310_R3677
3208.1
RHH5218_R3590
1661.4
RHH5247_R3619
2281.5
RHH5276_R3648
1101.9
Naive B-cell nTPM: 1890.3
Samples: 4
Max nTPM: 2363.7
Min nTPM: 1237.7
RHH5308_R3675
2363.7
RHH5216_R3588
2337.0
RHH5245_R3617
1237.7
RHH5274_R3646
1622.9
Non-switched memory B-cell nTPM: 2202.0
Samples: 4
Max nTPM: 2873.5
Min nTPM: 1191.8
RHH5309_R3676
2873.5
RHH5217_R3589
2077.7
RHH5246_R3618
2665.1
RHH5275_R3647
1191.8
Plasmablast nTPM: 3918.5
Samples: 4
Max nTPM: 4786.5
Min nTPM: 2551.8
RHH5312_R3679
3914.7
RHH5220_R3592
4420.8
RHH5249_R3621
4786.5
RHH5278_R3650
2551.8
Switched memory B-cell nTPM: 2437.0
Samples: 4
Max nTPM: 3780.4
Min nTPM: 1323.4
RHH5311_R3678
3780.4
RHH5219_R3591
2620.0
RHH5248_R3620
2024.1
RHH5277_R3649
1323.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
552.8
Schmiedel sample id
TPM
Naive B-cell TPM: 552.8
Samples: 91
Max TPM: 838.0
Min TPM: 239.5
B_CELL_NAIVE_1
838.0
B_CELL_NAIVE_2
721.5
B_CELL_NAIVE_3
715.5
B_CELL_NAIVE_4
712.9
B_CELL_NAIVE_5
711.2
B_CELL_NAIVE_6
708.1
B_CELL_NAIVE_7
697.6
B_CELL_NAIVE_8
684.3
B_CELL_NAIVE_9
683.0
B_CELL_NAIVE_10
677.5
B_CELL_NAIVE_11
667.3
B_CELL_NAIVE_12
664.7
B_CELL_NAIVE_13
660.8
B_CELL_NAIVE_14
658.6
B_CELL_NAIVE_15
658.0
B_CELL_NAIVE_16
655.0
B_CELL_NAIVE_17
653.3
B_CELL_NAIVE_18
644.7
B_CELL_NAIVE_19
643.6
B_CELL_NAIVE_20
640.6
B_CELL_NAIVE_21
637.0
B_CELL_NAIVE_22
636.2
B_CELL_NAIVE_23
632.8
B_CELL_NAIVE_24
631.0
B_CELL_NAIVE_25
630.1
B_CELL_NAIVE_26
629.3
B_CELL_NAIVE_27
626.3
B_CELL_NAIVE_28
621.8
B_CELL_NAIVE_29
621.3
B_CELL_NAIVE_30
617.8
B_CELL_NAIVE_31
617.8
B_CELL_NAIVE_32
615.5
B_CELL_NAIVE_33
615.3
B_CELL_NAIVE_34
614.3
B_CELL_NAIVE_35
612.4
B_CELL_NAIVE_36
611.9
B_CELL_NAIVE_37
609.1
B_CELL_NAIVE_38
594.9
B_CELL_NAIVE_39
594.7
B_CELL_NAIVE_40
590.1
B_CELL_NAIVE_41
589.7
B_CELL_NAIVE_42
588.3
B_CELL_NAIVE_43
580.1
B_CELL_NAIVE_44
578.8
B_CELL_NAIVE_45
576.3
B_CELL_NAIVE_46
570.5
B_CELL_NAIVE_47
567.3
B_CELL_NAIVE_48
566.8
B_CELL_NAIVE_49
564.5
B_CELL_NAIVE_50
559.6
B_CELL_NAIVE_51
558.1
B_CELL_NAIVE_52
556.0
B_CELL_NAIVE_53
555.5
B_CELL_NAIVE_54
547.3
B_CELL_NAIVE_55
547.1
B_CELL_NAIVE_56
543.3
B_CELL_NAIVE_57
542.4
B_CELL_NAIVE_58
533.8
B_CELL_NAIVE_59
530.8
B_CELL_NAIVE_60
530.0
B_CELL_NAIVE_61
526.4
B_CELL_NAIVE_62
525.3
B_CELL_NAIVE_63
520.4
B_CELL_NAIVE_64
519.4
B_CELL_NAIVE_65
512.5
B_CELL_NAIVE_66
511.5
B_CELL_NAIVE_67
509.0
B_CELL_NAIVE_68
508.9
B_CELL_NAIVE_69
502.1
B_CELL_NAIVE_70
493.7
B_CELL_NAIVE_71
488.6
B_CELL_NAIVE_72
484.8
B_CELL_NAIVE_73
483.3
B_CELL_NAIVE_74
474.5
B_CELL_NAIVE_75
470.5
B_CELL_NAIVE_76
460.7
B_CELL_NAIVE_77
436.4
B_CELL_NAIVE_78
428.3
B_CELL_NAIVE_79
398.5
B_CELL_NAIVE_80
395.7
B_CELL_NAIVE_81
393.0
B_CELL_NAIVE_82
391.4
B_CELL_NAIVE_83
380.0
B_CELL_NAIVE_84
340.8
B_CELL_NAIVE_85
308.2
B_CELL_NAIVE_86
298.5
B_CELL_NAIVE_87
275.7
B_CELL_NAIVE_88
273.4
B_CELL_NAIVE_89
262.0
B_CELL_NAIVE_90
249.7
B_CELL_NAIVE_91
239.5
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