A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1716.8
nTPM
Monaco:
1014.5
nTPM
Schmiedel:
287.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1716.8
HPA sample
nTPM
Classical monocyte nTPM: 1716.8
Samples: 6
Max nTPM: 3035.3
Min nTPM: 979.4
P10809_1003
3035.3
P10809_1020
1674.8
P10809_1039
1693.4
P10809_1058
1309.3
P10809_1080
979.4
P10809_1107
1608.7
Intermediate monocyte nTPM: 1557.0
Samples: 6
Max nTPM: 2106.0
Min nTPM: 1053.5
P10809_1004
1466.3
P10809_1023
1905.2
P10809_1042
1654.1
P10809_1061
1157.0
P10809_1081
1053.5
P10809_1108
2106.0
Non-classical monocyte nTPM: 931.0
Samples: 5
Max nTPM: 1168.0
Min nTPM: 635.4
P10809_1005
1135.4
P10809_1053
849.0
P10809_1072
867.2
P10809_1082
635.4
P10809_1109
1168.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1014.5
Monaco sample
nTPM
Classical monocyte nTPM: 1014.5
Samples: 4
Max nTPM: 1473.8
Min nTPM: 671.3
RHH5313_R3680
776.6
RHH5221_R3593
671.3
RHH5250_R3622
1473.8
RHH5279_R3651
1136.3
Intermediate monocyte nTPM: 939.3
Samples: 4
Max nTPM: 1262.0
Min nTPM: 594.7
RHH5314_R3681
1262.0
RHH5222_R3594
594.7
RHH5251_R3623
646.5
RHH5280_R3652
1254.1
Non-classical monocyte nTPM: 575.2
Samples: 4
Max nTPM: 701.8
Min nTPM: 425.1
RHH5315_R3682
701.8
RHH5223_R3595
425.1
RHH5252_R3624
496.6
RHH5281_R3653
677.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
287.5
Schmiedel sample id
TPM
Classical monocyte TPM: 287.5
Samples: 91
Max TPM: 369.7
Min TPM: 202.6
MONOCYTES_1
369.7
MONOCYTES_2
366.6
MONOCYTES_3
362.9
MONOCYTES_4
361.2
MONOCYTES_5
360.6
MONOCYTES_6
357.7
MONOCYTES_7
345.0
MONOCYTES_8
344.7
MONOCYTES_9
342.5
MONOCYTES_10
341.7
MONOCYTES_11
338.6
MONOCYTES_12
334.5
MONOCYTES_13
332.8
MONOCYTES_14
330.1
MONOCYTES_15
329.8
MONOCYTES_16
325.8
MONOCYTES_17
323.8
MONOCYTES_18
322.0
MONOCYTES_19
321.3
MONOCYTES_20
320.8
MONOCYTES_21
318.8
MONOCYTES_22
318.5
MONOCYTES_23
317.7
MONOCYTES_24
316.2
MONOCYTES_25
315.9
MONOCYTES_26
315.3
MONOCYTES_27
313.4
MONOCYTES_28
310.9
MONOCYTES_29
308.2
MONOCYTES_30
306.4
MONOCYTES_31
306.3
MONOCYTES_32
304.2
MONOCYTES_33
303.2
MONOCYTES_34
303.0
MONOCYTES_35
303.0
MONOCYTES_36
302.5
MONOCYTES_37
302.0
MONOCYTES_38
301.8
MONOCYTES_39
299.2
MONOCYTES_40
298.6
MONOCYTES_41
298.2
MONOCYTES_42
298.1
MONOCYTES_43
298.0
MONOCYTES_44
297.8
MONOCYTES_45
295.1
MONOCYTES_46
294.0
MONOCYTES_47
292.0
MONOCYTES_48
291.4
MONOCYTES_49
290.8
MONOCYTES_50
290.7
MONOCYTES_51
290.3
MONOCYTES_52
286.8
MONOCYTES_53
286.2
MONOCYTES_54
284.8
MONOCYTES_55
284.7
MONOCYTES_56
283.9
MONOCYTES_57
283.7
MONOCYTES_58
282.6
MONOCYTES_59
280.6
MONOCYTES_60
278.3
MONOCYTES_61
277.7
MONOCYTES_62
271.7
MONOCYTES_63
270.3
MONOCYTES_64
267.6
MONOCYTES_65
264.8
MONOCYTES_66
264.2
MONOCYTES_67
259.5
MONOCYTES_68
258.7
MONOCYTES_69
255.1
MONOCYTES_70
253.1
MONOCYTES_71
251.3
MONOCYTES_72
246.7
MONOCYTES_73
239.1
MONOCYTES_74
238.2
MONOCYTES_75
232.2
MONOCYTES_76
231.4
MONOCYTES_77
231.1
MONOCYTES_78
229.6
MONOCYTES_79
225.9
MONOCYTES_80
225.8
MONOCYTES_81
225.3
MONOCYTES_82
224.4
MONOCYTES_83
222.0
MONOCYTES_84
221.0
MONOCYTES_85
220.8
MONOCYTES_86
220.7
MONOCYTES_87
215.5
MONOCYTES_88
212.2
MONOCYTES_89
211.2
MONOCYTES_90
204.1
MONOCYTES_91
202.6
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Non-classical monocyte TPM: 179.2
Samples: 90
Max TPM: 252.4
Min TPM: 102.0
M2_1
252.4
M2_2
248.8
M2_3
240.3
M2_4
221.3
M2_5
217.8
M2_6
217.5
M2_7
216.9
M2_8
215.9
M2_9
213.2
M2_10
210.9
M2_11
210.5
M2_12
209.0
M2_13
207.7
M2_14
207.1
M2_15
206.8
M2_16
206.7
M2_17
206.3
M2_18
205.4
M2_19
205.4
M2_20
203.4
M2_21
202.6
M2_22
200.1
M2_23
200.0
M2_24
199.4
M2_25
198.9
M2_26
197.1
M2_27
197.0
M2_28
196.9
M2_29
196.7
M2_30
195.0
M2_31
193.3
M2_32
193.0
M2_33
192.8
M2_34
189.5
M2_35
189.4
M2_36
189.1
M2_37
188.9
M2_38
188.5
M2_39
188.3
M2_40
187.1
M2_41
185.0
M2_42
184.3
M2_43
184.2
M2_44
183.5
M2_45
183.1
M2_46
182.8
M2_47
182.5
M2_48
181.7
M2_49
181.2
M2_50
181.2
M2_51
180.9
M2_52
180.3
M2_53
179.9
M2_54
179.6
M2_55
176.7
M2_56
176.5
M2_57
176.1
M2_58
174.9
M2_59
174.9
M2_60
173.8
M2_61
173.1
M2_62
172.8
M2_63
170.8
M2_64
170.2
M2_65
166.9
M2_66
165.2
M2_67
160.9
M2_68
160.8
M2_69
160.6
M2_70
160.2
M2_71
158.7
M2_72
157.7
M2_73
155.7
M2_74
155.0
M2_75
154.3
M2_76
150.9
M2_77
148.5
M2_78
139.7
M2_79
138.3
M2_80
136.7
M2_81
131.7
M2_82
125.8
M2_83
122.5
M2_84
121.7
M2_85
120.0
M2_86
112.0
M2_87
108.3
M2_88
107.1
M2_89
105.6
M2_90
102.0
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