A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2345.7
nTPM
Monaco:
541.4
nTPM
Schmiedel:
259.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2345.7
HPA sample
nTPM
NK-cell nTPM: 2345.7
Samples: 6
Max nTPM: 2995.2
Min nTPM: 1547.5
P10809_1013
1715.6
P10809_1033
2995.2
P10809_1052
2299.7
P10809_1071
2695.5
P10809_1093
1547.5
P10809_1103
2820.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
541.4
Monaco sample
nTPM
NK-cell nTPM: 541.4
Samples: 4
Max nTPM: 675.2
Min nTPM: 326.0
RHH5316_R3683
625.8
RHH5224_R3596
675.2
RHH5253_R3625
326.0
RHH5282_R3654
538.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
259.8
Schmiedel sample id
TPM
NK-cell TPM: 259.8
Samples: 90
Max TPM: 444.0
Min TPM: 159.9
NK_1
444.0
NK_2
343.8
NK_3
334.9
NK_4
332.0
NK_5
326.7
NK_6
326.7
NK_7
324.4
NK_8
314.6
NK_9
314.2
NK_10
314.1
NK_11
309.3
NK_12
305.1
NK_13
304.7
NK_14
299.6
NK_15
298.9
NK_16
298.8
NK_17
298.8
NK_18
298.8
NK_19
297.9
NK_20
297.8
NK_21
297.0
NK_22
296.8
NK_23
296.7
NK_24
296.2
NK_25
289.1
NK_26
288.0
NK_27
286.1
NK_28
285.5
NK_29
282.9
NK_30
282.3
NK_31
282.1
NK_32
280.0
NK_33
279.0
NK_34
278.2
NK_35
273.8
NK_36
271.5
NK_37
270.2
NK_38
269.6
NK_39
267.0
NK_40
266.4
NK_41
265.7
NK_42
264.0
NK_43
263.9
NK_44
261.9
NK_45
260.7
NK_46
260.4
NK_47
260.3
NK_48
257.9
NK_49
257.8
NK_50
257.5
NK_51
252.2
NK_52
250.9
NK_53
246.8
NK_54
246.8
NK_55
246.4
NK_56
245.8
NK_57
242.5
NK_58
242.4
NK_59
241.2
NK_60
240.8
NK_61
240.6
NK_62
239.5
NK_63
238.8
NK_64
236.4
NK_65
233.6
NK_66
233.0
NK_67
232.0
NK_68
228.8
NK_69
228.7
NK_70
226.2
NK_71
223.9
NK_72
222.7
NK_73
221.7
NK_74
221.2
NK_75
217.1
NK_76
214.6
NK_77
212.8
NK_78
207.7
NK_79
203.6
NK_80
200.6
NK_81
196.2
NK_82
195.6
NK_83
193.9
NK_84
193.7
NK_85
182.8
NK_86
179.9
NK_87
179.3
NK_88
162.5
NK_89
161.0
NK_90
159.9
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