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RPLP0
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • CELL LINE

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  • RPLP0
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1467.4 nTPM
HPA:1186.4 nTPM
GTEx:1467.4 nTPM
FANTOM5:103.4 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003512Antibody HPA073501
Glandular cells MediumHigh



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1186.4
overview
Male, age 65
Small intestine sample 232
nTPM: 1494.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1039.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1116.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1095.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1467.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1467.4
Samples: 207

Max nTPM: 2475.5
Min nTPM: 703.5
Std nTPM: 335.2
Median nTPM: 1448.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 2475.5
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 2375.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2365.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2321.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 2241.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2238.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 2223.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 2221.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 2200.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2195.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2171.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2149.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 2130.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2095.0
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 2089.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 2069.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 2035.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1992.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1990.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1978.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1955.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1915.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1898.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1868.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1849.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1834.1
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 1823.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1816.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1806.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1804.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1783.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1782.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1780.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1772.3
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 1761.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1740.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1734.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1728.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1726.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1726.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1678.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1671.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 1671.1
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 1670.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1666.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1657.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1653.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1648.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1645.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1636.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1630.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1625.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1622.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1616.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1614.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1612.0
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 1604.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1600.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1594.0
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 1590.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1590.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1586.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1582.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1576.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1575.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1573.6
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 1558.6
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 1558.0
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 1557.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1554.3
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1549.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1547.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1545.8
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 1539.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1539.5
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 1537.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1532.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1530.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1519.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1516.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1510.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1506.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1505.3
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 1502.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1502.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1498.5
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 1492.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1487.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1476.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1474.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1474.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1473.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1470.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1469.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1469.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 1469.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1465.8
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 1461.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1450.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1450.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1449.9
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 1449.3
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 1449.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1448.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1447.4
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 1441.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1441.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1435.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1432.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1428.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1427.1
GTEX-1192X-2526-SM-59868 50-59 years, male 1425.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1423.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1420.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1416.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1413.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1412.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1404.3
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 1400.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1399.9
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 1399.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1396.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1376.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1367.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1364.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1364.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1357.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1356.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1355.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1353.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1351.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1350.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1348.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1345.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1338.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1336.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1328.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1322.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1320.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1320.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1313.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1309.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1301.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1300.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1297.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1292.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1288.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1285.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1280.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1275.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1275.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1265.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 1259.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1256.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1252.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1246.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1243.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1241.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1241.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1240.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1223.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1212.1
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 1203.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1193.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1169.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1169.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1163.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1161.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1147.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1147.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1143.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1140.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1140.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1135.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1132.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1131.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1129.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1128.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1120.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1118.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1108.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1102.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1099.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1086.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1077.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1072.8
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 1072.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1038.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1037.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1022.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1010.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1009.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1007.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1000.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 994.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 990.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 973.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 972.5
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 967.9
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 933.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 919.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 918.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 914.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 879.8
GTEX-178AV-1226-SM-GOR11 40-49 years, male 804.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 770.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 703.5
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

103.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 103.4
FF:10024-101D6 15,40,85 years, mixed 103.4

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The Human Protein Atlas

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KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

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