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  • SUMMARY

  • TISSUE

  • BRAIN

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  • RPLP0
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Tissue methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:671.7 nTPM
HPA Brain:367.5 nTPM
GTEx:671.7 nTPM
FANTOM5:26.8 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

367.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 298.5
2565 Male, age 75, midline 382.1
1981 Female, age 72, midline 335.6
2048 Male, age 55, midline 270.1
2816 Male, age 47, midline 265.5
2194 Female, age 79, both hemispheres 239.4
Cervical spinal cord, dorsal horn
nTPM: 287.8
2173 Female, age 72, unknown 380.5
2069 Male, age 47, both hemispheres 324.6
2296 Male, age 66, both hemispheres 297.0
1877 Male, age 55, unknown 294.8
2721 Male, age 90, both hemispheres 234.5
2297 Male, age 75, both hemispheres 195.2
Cervical spinal cord, ventral horn
nTPM: 367.5
2809 Male, age 90, both hemispheres 486.6
2480 Male, age 75, both hemispheres 451.9
2098 Female, age 72, unknown 435.2
2295 Male, age 66, both hemispheres 318.9
2068 Male, age 55, unknown 300.4
2820 Female, age 79, both hemispheres 211.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

671.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 671.7
Samples: 204

Max nTPM: 1554.2
Min nTPM: 276.3
Std nTPM: 175.5
Median nTPM: 654.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1554.2
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 1320.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1284.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1111.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 1109.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 1100.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1089.6
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 1039.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 1018.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1003.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1002.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 992.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 931.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 930.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 893.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 883.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 875.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 875.3
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 869.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 869.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 864.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 862.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 854.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 852.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 850.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 837.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 834.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 834.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 833.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 829.0
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 821.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 819.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 818.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 814.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 811.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 811.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 808.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 804.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 801.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 800.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 799.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 794.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 791.4
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 789.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 787.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 784.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 782.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 775.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 769.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 768.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 758.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 750.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 750.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 740.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 740.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 740.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 737.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 736.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 735.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 733.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 731.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 727.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 727.2
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 724.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 724.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 721.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 720.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 719.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 718.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 713.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 711.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 710.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 709.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 708.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 708.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 700.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 694.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 692.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 691.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 691.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 689.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 686.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 681.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 680.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 678.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 678.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 676.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 676.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 672.4
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 671.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 670.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 669.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 669.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 664.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 663.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 663.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 661.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 661.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 658.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 656.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 655.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 654.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 654.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 653.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 650.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 648.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 646.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 640.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 636.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 635.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 633.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 631.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 629.3
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 627.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 626.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 625.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 624.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 623.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 621.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 619.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 617.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 615.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 615.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 614.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 613.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 612.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 611.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 610.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 610.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 606.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 606.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 605.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 603.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 600.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 596.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 595.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 595.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 594.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 592.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 590.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 587.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 585.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 584.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 581.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 573.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 569.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 562.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 562.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 562.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 559.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 558.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 557.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 557.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 554.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 553.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 552.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 549.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 541.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 541.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 539.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 538.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 538.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 537.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 535.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 528.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 518.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 517.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 516.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 512.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 510.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 510.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 508.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 506.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 505.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 502.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 500.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 494.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 493.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 493.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 492.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 490.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 490.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 486.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 480.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 475.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 475.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 475.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 470.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 468.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 452.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 450.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 450.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 442.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 436.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 430.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 427.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 420.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 416.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 416.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 396.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 396.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 383.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 320.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 276.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

26.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 26.8
FF:10159-103A6 76 years, female 27.2
FF:10181-103D1 60 years, female 26.4

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