A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
35.3
nTPM
Monaco:
140.8
nTPM
Schmiedel:
276.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.3
HPA sample
nTPM
Memory B-cell nTPM: 29.2
Samples: 6
Max nTPM: 41.8
Min nTPM: 8.9
P10809_1017
41.8
P10809_1025
32.4
P10809_1044
8.9
P10809_1063
23.9
P10809_1092
38.2
P10809_1105
29.9
Naive B-cell nTPM: 35.3
Samples: 6
Max nTPM: 39.9
Min nTPM: 32.7
P10809_1011
34.6
P10809_1029
35.2
P10809_1048
39.9
P10809_1067
32.7
P10809_1091
35.6
P10809_1104
33.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
140.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 109.6
Samples: 4
Max nTPM: 125.5
Min nTPM: 92.4
RHH5310_R3677
101.8
RHH5218_R3590
118.8
RHH5247_R3619
92.4
RHH5276_R3648
125.5
Naive B-cell nTPM: 96.7
Samples: 4
Max nTPM: 113.4
Min nTPM: 69.5
RHH5308_R3675
108.4
RHH5216_R3588
95.3
RHH5245_R3617
69.5
RHH5274_R3646
113.4
Non-switched memory B-cell nTPM: 103.6
Samples: 4
Max nTPM: 114.5
Min nTPM: 86.3
RHH5309_R3676
106.7
RHH5217_R3589
114.5
RHH5246_R3618
86.3
RHH5275_R3647
107.0
Plasmablast nTPM: 140.8
Samples: 4
Max nTPM: 167.1
Min nTPM: 108.4
RHH5312_R3679
167.1
RHH5220_R3592
108.4
RHH5249_R3621
129.7
RHH5278_R3650
158.0
Switched memory B-cell nTPM: 110.4
Samples: 4
Max nTPM: 144.4
Min nTPM: 89.8
RHH5311_R3678
102.3
RHH5219_R3591
144.4
RHH5248_R3620
105.1
RHH5277_R3649
89.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
276.5
Schmiedel sample id
TPM
Naive B-cell TPM: 276.5
Samples: 91
Max TPM: 384.5
Min TPM: 159.4
B_CELL_NAIVE_1
384.5
B_CELL_NAIVE_2
354.7
B_CELL_NAIVE_3
341.5
B_CELL_NAIVE_4
335.1
B_CELL_NAIVE_5
329.2
B_CELL_NAIVE_6
329.1
B_CELL_NAIVE_7
328.7
B_CELL_NAIVE_8
328.1
B_CELL_NAIVE_9
322.2
B_CELL_NAIVE_10
318.8
B_CELL_NAIVE_11
312.4
B_CELL_NAIVE_12
306.9
B_CELL_NAIVE_13
306.7
B_CELL_NAIVE_14
306.1
B_CELL_NAIVE_15
305.3
B_CELL_NAIVE_16
303.1
B_CELL_NAIVE_17
302.6
B_CELL_NAIVE_18
298.2
B_CELL_NAIVE_19
296.4
B_CELL_NAIVE_20
293.5
B_CELL_NAIVE_21
292.8
B_CELL_NAIVE_22
291.1
B_CELL_NAIVE_23
290.1
B_CELL_NAIVE_24
290.1
B_CELL_NAIVE_25
289.5
B_CELL_NAIVE_26
287.8
B_CELL_NAIVE_27
287.7
B_CELL_NAIVE_28
287.4
B_CELL_NAIVE_29
287.1
B_CELL_NAIVE_30
287.0
B_CELL_NAIVE_31
285.4
B_CELL_NAIVE_32
284.9
B_CELL_NAIVE_33
284.4
B_CELL_NAIVE_34
283.9
B_CELL_NAIVE_35
283.5
B_CELL_NAIVE_36
283.3
B_CELL_NAIVE_37
283.0
B_CELL_NAIVE_38
283.0
B_CELL_NAIVE_39
281.7
B_CELL_NAIVE_40
281.6
B_CELL_NAIVE_41
280.6
B_CELL_NAIVE_42
280.0
B_CELL_NAIVE_43
278.7
B_CELL_NAIVE_44
277.9
B_CELL_NAIVE_45
277.4
B_CELL_NAIVE_46
277.3
B_CELL_NAIVE_47
276.1
B_CELL_NAIVE_48
275.7
B_CELL_NAIVE_49
274.9
B_CELL_NAIVE_50
274.4
B_CELL_NAIVE_51
273.9
B_CELL_NAIVE_52
273.5
B_CELL_NAIVE_53
272.8
B_CELL_NAIVE_54
272.7
B_CELL_NAIVE_55
271.8
B_CELL_NAIVE_56
267.7
B_CELL_NAIVE_57
267.1
B_CELL_NAIVE_58
267.1
B_CELL_NAIVE_59
267.0
B_CELL_NAIVE_60
266.6
B_CELL_NAIVE_61
265.7
B_CELL_NAIVE_62
265.0
B_CELL_NAIVE_63
264.9
B_CELL_NAIVE_64
264.3
B_CELL_NAIVE_65
263.3
B_CELL_NAIVE_66
261.9
B_CELL_NAIVE_67
261.8
B_CELL_NAIVE_68
261.6
B_CELL_NAIVE_69
261.5
B_CELL_NAIVE_70
261.3
B_CELL_NAIVE_71
259.3
B_CELL_NAIVE_72
258.0
B_CELL_NAIVE_73
255.8
B_CELL_NAIVE_74
255.7
B_CELL_NAIVE_75
255.7
B_CELL_NAIVE_76
254.7
B_CELL_NAIVE_77
247.3
B_CELL_NAIVE_78
245.0
B_CELL_NAIVE_79
242.5
B_CELL_NAIVE_80
242.3
B_CELL_NAIVE_81
240.5
B_CELL_NAIVE_82
239.1
B_CELL_NAIVE_83
238.1
B_CELL_NAIVE_84
237.7
B_CELL_NAIVE_85
222.0
B_CELL_NAIVE_86
221.9
B_CELL_NAIVE_87
219.6
B_CELL_NAIVE_88
219.5
B_CELL_NAIVE_89
214.1
B_CELL_NAIVE_90
199.8
B_CELL_NAIVE_91
159.4
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