A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
67.3
nTPM
Monaco:
182.4
nTPM
Schmiedel:
172.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.3
HPA sample
nTPM
Classical monocyte nTPM: 38.2
Samples: 6
Max nTPM: 62.4
Min nTPM: 25.5
P10809_1003
62.4
P10809_1020
48.1
P10809_1039
25.5
P10809_1058
30.8
P10809_1080
28.2
P10809_1107
34.3
Intermediate monocyte nTPM: 67.3
Samples: 6
Max nTPM: 95.2
Min nTPM: 43.2
P10809_1004
66.0
P10809_1023
63.9
P10809_1042
95.2
P10809_1061
73.9
P10809_1081
43.2
P10809_1108
61.5
Non-classical monocyte nTPM: 59.6
Samples: 5
Max nTPM: 93.3
Min nTPM: 35.5
P10809_1005
67.2
P10809_1053
59.6
P10809_1072
93.3
P10809_1082
35.5
P10809_1109
42.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
182.4
Monaco sample
nTPM
Classical monocyte nTPM: 171.2
Samples: 4
Max nTPM: 211.2
Min nTPM: 124.2
RHH5313_R3680
211.2
RHH5221_R3593
124.2
RHH5250_R3622
186.4
RHH5279_R3651
163.1
Intermediate monocyte nTPM: 182.4
Samples: 4
Max nTPM: 247.1
Min nTPM: 97.0
RHH5314_R3681
247.1
RHH5222_R3594
97.0
RHH5251_R3623
157.7
RHH5280_R3652
227.8
Non-classical monocyte nTPM: 145.8
Samples: 4
Max nTPM: 197.4
Min nTPM: 70.5
RHH5315_R3682
197.4
RHH5223_R3595
70.5
RHH5252_R3624
146.2
RHH5281_R3653
169.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
172.8
Schmiedel sample id
TPM
Classical monocyte TPM: 172.8
Samples: 91
Max TPM: 237.7
Min TPM: 116.7
MONOCYTES_1
237.7
MONOCYTES_2
228.6
MONOCYTES_3
221.0
MONOCYTES_4
214.8
MONOCYTES_5
212.8
MONOCYTES_6
208.6
MONOCYTES_7
206.4
MONOCYTES_8
201.0
MONOCYTES_9
200.4
MONOCYTES_10
200.2
MONOCYTES_11
198.5
MONOCYTES_12
198.0
MONOCYTES_13
196.7
MONOCYTES_14
196.4
MONOCYTES_15
195.8
MONOCYTES_16
195.1
MONOCYTES_17
194.1
MONOCYTES_18
194.1
MONOCYTES_19
193.9
MONOCYTES_20
193.4
MONOCYTES_21
191.5
MONOCYTES_22
190.1
MONOCYTES_23
188.5
MONOCYTES_24
187.8
MONOCYTES_25
187.5
MONOCYTES_26
187.0
MONOCYTES_27
186.7
MONOCYTES_28
186.5
MONOCYTES_29
185.4
MONOCYTES_30
184.8
MONOCYTES_31
183.9
MONOCYTES_32
183.2
MONOCYTES_33
182.8
MONOCYTES_34
177.9
MONOCYTES_35
177.5
MONOCYTES_36
177.3
MONOCYTES_37
175.8
MONOCYTES_38
175.7
MONOCYTES_39
175.4
MONOCYTES_40
174.9
MONOCYTES_41
174.7
MONOCYTES_42
174.7
MONOCYTES_43
172.1
MONOCYTES_44
171.8
MONOCYTES_45
171.1
MONOCYTES_46
171.1
MONOCYTES_47
171.0
MONOCYTES_48
169.1
MONOCYTES_49
168.1
MONOCYTES_50
167.1
MONOCYTES_51
165.3
MONOCYTES_52
164.5
MONOCYTES_53
164.5
MONOCYTES_54
164.0
MONOCYTES_55
163.8
MONOCYTES_56
163.5
MONOCYTES_57
163.1
MONOCYTES_58
162.7
MONOCYTES_59
162.3
MONOCYTES_60
162.3
MONOCYTES_61
161.3
MONOCYTES_62
161.0
MONOCYTES_63
159.5
MONOCYTES_64
159.3
MONOCYTES_65
156.7
MONOCYTES_66
155.2
MONOCYTES_67
155.2
MONOCYTES_68
155.2
MONOCYTES_69
155.1
MONOCYTES_70
155.0
MONOCYTES_71
154.1
MONOCYTES_72
153.8
MONOCYTES_73
153.6
MONOCYTES_74
153.4
MONOCYTES_75
152.8
MONOCYTES_76
152.6
MONOCYTES_77
152.2
MONOCYTES_78
151.9
MONOCYTES_79
151.5
MONOCYTES_80
151.3
MONOCYTES_81
151.0
MONOCYTES_82
150.3
MONOCYTES_83
148.9
MONOCYTES_84
143.1
MONOCYTES_85
141.7
MONOCYTES_86
139.1
MONOCYTES_87
137.9
MONOCYTES_88
136.8
MONOCYTES_89
134.4
MONOCYTES_90
129.7
MONOCYTES_91
116.7
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Non-classical monocyte TPM: 170.4
Samples: 90
Max TPM: 256.3
Min TPM: 128.8
M2_1
256.3
M2_2
229.5
M2_3
217.6
M2_4
214.0
M2_5
213.3
M2_6
209.8
M2_7
203.8
M2_8
203.1
M2_9
201.6
M2_10
198.2
M2_11
197.8
M2_12
197.5
M2_13
197.3
M2_14
195.0
M2_15
194.5
M2_16
193.4
M2_17
190.6
M2_18
188.0
M2_19
187.3
M2_20
186.8
M2_21
183.9
M2_22
183.8
M2_23
183.5
M2_24
182.9
M2_25
180.7
M2_26
180.5
M2_27
180.4
M2_28
180.3
M2_29
179.9
M2_30
179.8
M2_31
179.2
M2_32
177.6
M2_33
177.3
M2_34
175.2
M2_35
174.9
M2_36
174.8
M2_37
174.1
M2_38
173.5
M2_39
173.1
M2_40
172.8
M2_41
172.1
M2_42
171.1
M2_43
167.7
M2_44
167.1
M2_45
166.6
M2_46
166.5
M2_47
165.9
M2_48
164.8
M2_49
164.1
M2_50
164.1
M2_51
164.0
M2_52
162.4
M2_53
162.3
M2_54
161.8
M2_55
161.3
M2_56
161.1
M2_57
160.4
M2_58
160.0
M2_59
157.7
M2_60
157.4
M2_61
157.0
M2_62
156.9
M2_63
156.8
M2_64
156.7
M2_65
156.5
M2_66
156.4
M2_67
156.4
M2_68
154.7
M2_69
154.6
M2_70
154.2
M2_71
152.4
M2_72
150.4
M2_73
150.4
M2_74
149.6
M2_75
149.2
M2_76
147.8
M2_77
146.6
M2_78
145.3
M2_79
144.0
M2_80
143.8
M2_81
142.2
M2_82
141.4
M2_83
141.0
M2_84
140.0
M2_85
139.8
M2_86
138.0
M2_87
134.1
M2_88
133.1
M2_89
131.8
M2_90
128.8
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