A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
37.3
nTPM
Monaco:
104.8
nTPM
Schmiedel:
249.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.3
HPA sample
nTPM
NK-cell nTPM: 37.4
Samples: 6
Max nTPM: 60.8
Min nTPM: 8.7
P10809_1013
60.8
P10809_1033
35.1
P10809_1052
44.2
P10809_1071
36.5
P10809_1093
8.7
P10809_1103
38.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
104.8
Monaco sample
nTPM
NK-cell nTPM: 104.8
Samples: 4
Max nTPM: 154.2
Min nTPM: 70.7
RHH5316_R3683
154.2
RHH5224_R3596
95.9
RHH5253_R3625
70.7
RHH5282_R3654
98.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
249.7
Schmiedel sample id
TPM
NK-cell TPM: 249.7
Samples: 90
Max TPM: 346.3
Min TPM: 134.2
NK_1
346.3
NK_2
341.6
NK_3
333.8
NK_4
325.8
NK_5
322.9
NK_6
315.6
NK_7
315.0
NK_8
314.7
NK_9
308.0
NK_10
301.6
NK_11
301.4
NK_12
296.4
NK_13
294.1
NK_14
288.7
NK_15
286.4
NK_16
285.2
NK_17
285.1
NK_18
282.2
NK_19
279.5
NK_20
279.3
NK_21
276.0
NK_22
272.3
NK_23
271.7
NK_24
269.4
NK_25
267.9
NK_26
267.8
NK_27
266.1
NK_28
264.9
NK_29
264.9
NK_30
264.7
NK_31
264.6
NK_32
262.3
NK_33
261.4
NK_34
258.7
NK_35
258.6
NK_36
258.4
NK_37
255.4
NK_38
255.3
NK_39
254.6
NK_40
254.2
NK_41
253.1
NK_42
252.6
NK_43
251.0
NK_44
248.6
NK_45
247.5
NK_46
245.8
NK_47
245.8
NK_48
245.5
NK_49
245.0
NK_50
244.1
NK_51
243.8
NK_52
242.8
NK_53
241.3
NK_54
240.0
NK_55
239.7
NK_56
239.6
NK_57
239.5
NK_58
239.0
NK_59
235.0
NK_60
234.0
NK_61
233.9
NK_62
232.8
NK_63
232.3
NK_64
231.6
NK_65
230.6
NK_66
223.9
NK_67
222.0
NK_68
221.9
NK_69
220.1
NK_70
219.1
NK_71
217.9
NK_72
215.4
NK_73
215.1
NK_74
214.1
NK_75
212.4
NK_76
211.5
NK_77
207.8
NK_78
207.0
NK_79
205.5
NK_80
203.7
NK_81
202.0
NK_82
201.1
NK_83
200.8
NK_84
200.7
NK_85
199.7
NK_86
195.3
NK_87
191.6
NK_88
179.2
NK_89
139.4
NK_90
134.2
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