MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.6 nTPM
HPA Brain:72.8 nTPM
GTEx:22.6 nTPM
FANTOM5:97.1 Scaled Tags Per Million
Pig:57.9 nTPM
Mouse:72.1 nTPM
Allen mouse:4.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 72.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.1
2411 Female, age 72, unknown 71.8
2019 Male, age 18, unknown 71.5
2666 Male, age 74, left hemisphere 70.1
1827 Male, age 72, unknown 69.4
1870 Female, age 42, unknown 67.5
1833 Male, age 53, unknown 63.6
2828 Female, age 72, unknown 62.0
1830 Male, age 51, unknown 58.5
2219 Male, age 76, both hemispheres 54.1
2586 Male, age 75, left hemisphere 52.6
Dorsal raphe nucleus
nTPM: 68.9
2298 Female, age 72, unknown 82.1
2750 Male, age 76, both hemispheres 68.5
1828 Male, age 53, unknown 66.7
2016 Female, age 72, unknown 64.6
2047 Male, age 72, unknown 62.8
Inferior colliculus
nTPM: 61.1
2097 Female, age 72, unknown 66.5
1848 Female, age 42, unknown 60.5
1890 Male, age 53, unknown 60.3
2849 Male, age 72, unknown 56.8
Median raphe nucleus
nTPM: 64.7
2220 Male, age 76, midline 64.7
Periaquaductal grey, anterior
nTPM: 72.8
1947 Male, age 18, unknown 75.5
2502 Female, age 75, unknown 71.5
1795 Male, age 51, unknown 71.3
Periaquaductal grey, dorsal
nTPM: 63.2
2850 Male, age 76, both hemispheres 73.1
2464 Female, age 72, unknown 61.7
1831 Male, age 72, unknown 59.4
1840 Male, age 53, unknown 58.6
Periaquaductal grey, lateral
nTPM: 69.2
2272 Male, age 74, both hemispheres 77.2
2140 Male, age 76, both hemispheres 68.7
2053 Male, age 18, unknown 61.7
Pretectal area
nTPM: 69.7
1817 Female, age 42, unknown 78.7
2273 Male, age 74, both hemispheres 77.7
2007 Male, age 72, unknown 76.2
1816 Male, age 51, unknown 73.7
2667 Female, age 75, unknown 73.7
2224 Female, age 72, unknown 71.3
1815 Male, age 53, unknown 70.3
1944 Female, age 72, unknown 65.8
2825 Male, age 18, unknown 61.8
2316 Male, age 76, right hemisphere 60.7
2407 Male, age 75, both hemispheres 57.1
Red nucleus
nTPM: 63.6
1821 Female, age 72, unknown 73.8
2785 Male, age 18, unknown 67.6
1904 Male, age 53, unknown 66.1
2725 Female, age 75, unknown 65.8
1865 Male, age 51, unknown 65.5
2503 Female, age 72, unknown 65.1
2227 Male, age 72, unknown 62.6
2769 Male, age 72, unknown 62.3
1954 Female, age 42, unknown 62.0
2823 Male, age 76, right hemisphere 60.3
2588 Male, age 74, left hemisphere 60.0
2584 Male, age 75, left hemisphere 52.4
Substantia nigra
nTPM: 64.8
1916 Female, age 42, unknown 75.1
2241 Male, age 72, unknown 71.3
1851 Male, age 51, unknown 70.5
1889 Female, age 72, unknown 69.1
1941 Male, age 53, unknown 65.4
2665 Male, age 74, both hemispheres 65.0
2590 Female, age 75, unknown 61.3
2409 Female, age 72, unknown 60.7
2699 Male, age 18, unknown 56.5
2583 Male, age 75, right hemisphere 52.8
Superior colliculus
nTPM: 63.5
2261 Male, age 18, unknown 72.8
1796 Male, age 53, unknown 68.7
1913 Female, age 42, unknown 66.7
2587 Male, age 74, left hemisphere 66.5
2087 Female, age 72, unknown 66.2
2668 Female, age 75, unknown 61.3
1995 Male, age 72, unknown 61.2
1895 Male, age 76, right hemisphere 61.1
1839 Male, age 51, unknown 60.8
2664 Male, age 75, both hemispheres 49.9
Ventral tegmental area
nTPM: 66.4
2410 Female, age 72, unknown 71.1
1915 Female, age 42, unknown 69.5
2218 Male, age 76, both hemispheres 65.7
2223 Female, age 72, unknown 64.5
1942 Male, age 51, unknown 63.9
2021 Male, age 53, unknown 63.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 22.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.6
Samples: 183

Max nTPM: 59.0
Min nTPM: 3.0
Std nTPM: 10.5
Median nTPM: 23.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 59.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 51.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 50.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 49.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 46.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 41.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 40.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 40.7
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 40.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 40.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 40.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 97.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.1
FF:10158-103A5 76 years, female 97.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 57.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 51.5
Samples: 4

Max nTPM: 55.7
Min nTPM: 49.0
Sample A Female 55.7
Sample B Female 49.0
Sample C Male 51.5
Sample D Male 49.8
Midbrain
nTPM: 50.7
Samples: 4

Max nTPM: 58.0
Min nTPM: 42.5
Sample A Female 58.0
Sample B Female 42.5
Sample C Male 54.8
Sample D Male 47.4
Periaqueductal gray
nTPM: 43.9
Samples: 3

Max nTPM: 49.0
Min nTPM: 39.9
Sample B Female 42.9
Sample C Male 49.0
Sample D Male 39.9
Superior colliculi
nTPM: 58.0
Samples: 4

Max nTPM: 64.5
Min nTPM: 52.4
Sample A Female 62.0
Sample B Female 64.5
Sample C Male 52.4
Sample D Male 52.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 72.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 72.1
Samples: 4

Max nTPM: 75.7
Min nTPM: 67.8
Sample A Male 67.8
Sample B Male 72.4
Sample C Female 75.7
Sample D Female 72.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
69672778 Antisense, RP_050428_04_E01, Mouse strain C57BL/6J (56 days, male) 4.2

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