We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
GANAB
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • GANAB
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:30.5 nTPM
HPA Brain:74.7 nTPM
GTEx:30.5 nTPM
FANTOM5:75.4 Scaled Tags Per Million
Pig:52.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 72.3
2565 Male, age 75, midline 81.5
1981 Female, age 72, midline 77.2
2816 Male, age 47, midline 73.4
2048 Male, age 55, midline 65.4
2194 Female, age 79, both hemispheres 64.2
Cervical spinal cord, dorsal horn
nTPM: 74.7
2296 Male, age 66, both hemispheres 88.5
2069 Male, age 47, both hemispheres 80.5
2173 Female, age 72, unknown 79.0
2297 Male, age 75, both hemispheres 72.4
1877 Male, age 55, unknown 65.3
2721 Male, age 90, both hemispheres 62.3
Cervical spinal cord, ventral horn
nTPM: 70.9
2098 Female, age 72, unknown 86.4
2809 Male, age 90, both hemispheres 82.7
2480 Male, age 75, both hemispheres 68.2
2068 Male, age 55, unknown 67.4
2295 Male, age 66, both hemispheres 62.5
2820 Female, age 79, both hemispheres 58.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

30.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 30.5
Samples: 204

Max nTPM: 60.7
Min nTPM: 1.8
Std nTPM: 13.3
Median nTPM: 30.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 60.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 58.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 57.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 54.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 54.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 53.7
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 53.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 53.0
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 52.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 52.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 52.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 52.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 50.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 50.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 50.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 50.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 50.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 49.6
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 49.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 49.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 48.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 48.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 48.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 47.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 47.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 47.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 46.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 46.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 45.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 45.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 45.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 45.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 45.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 44.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 43.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 43.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 43.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 43.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 43.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 42.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 42.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 42.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 41.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 41.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 41.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 41.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 41.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 41.3
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 41.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 41.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 41.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 41.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 41.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 40.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 39.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 39.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 39.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 39.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 39.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 39.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 39.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 39.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 38.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 38.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 37.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 37.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 37.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 37.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 37.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 37.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 36.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 35.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 35.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 35.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 35.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 35.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 35.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 35.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 35.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 35.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 34.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 34.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 34.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 34.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 34.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 34.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 34.2
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 34.2
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 34.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 33.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 33.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 33.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 33.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 32.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 32.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 32.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 32.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 32.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 31.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 31.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 31.2
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 30.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 30.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 30.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 30.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 29.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 29.2
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 28.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 28.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 28.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 28.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 28.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 28.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 27.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 27.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 26.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 26.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 26.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 26.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 26.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 26.2
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 26.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 25.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 25.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 25.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 25.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 25.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 25.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 25.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 24.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 24.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 24.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 24.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 24.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 24.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 24.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 23.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 23.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 23.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 23.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 23.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 23.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 22.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 22.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 22.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 22.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 22.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 22.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 22.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 21.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 21.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 21.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 20.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 20.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 20.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 20.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 19.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 19.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 19.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 19.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 19.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 19.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 19.2
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 18.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 18.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 18.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 18.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 18.0
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 17.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 17.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 17.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 16.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 16.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 15.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 15.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 15.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 15.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 15.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 14.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 14.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 13.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 13.2
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 13.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 12.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 12.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 11.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 11.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 11.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 9.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 9.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 8.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 8.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 8.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 8.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 7.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 6.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 6.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 6.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 5.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 4.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 3.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 2.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 2.1
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 1.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

75.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 75.4
FF:10159-103A6 76 years, female 77.9
FF:10181-103D1 60 years, female 72.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 52.1
Samples: 4

Max nTPM: 59.1
Min nTPM: 44.6
Sample A Female 53.1
Sample B Female 44.6
Sample C Male 59.1
Sample D Male 51.7
Ventral spinal cord
nTPM: 52.1
Samples: 4

Max nTPM: 58.6
Min nTPM: 46.5
Sample A Female 55.2
Sample B Female 48.1
Sample C Male 58.6
Sample D Male 46.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo