A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
98.0
nTPM
Monaco:
233.6
nTPM
Schmiedel:
63.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
98.0
HPA sample
nTPM
Memory B-cell nTPM: 85.9
Samples: 6
Max nTPM: 122.5
Min nTPM: 19.4
P10809_1017
87.6
P10809_1025
83.8
P10809_1044
19.4
P10809_1063
105.4
P10809_1092
96.5
P10809_1105
122.5
Naive B-cell nTPM: 98.0
Samples: 6
Max nTPM: 130.9
Min nTPM: 78.7
P10809_1011
78.7
P10809_1029
79.3
P10809_1048
104.9
P10809_1067
97.4
P10809_1091
96.9
P10809_1104
130.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
233.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 191.5
Samples: 4
Max nTPM: 257.0
Min nTPM: 108.2
RHH5310_R3677
257.0
RHH5218_R3590
208.0
RHH5247_R3619
192.7
RHH5276_R3648
108.2
Naive B-cell nTPM: 178.9
Samples: 4
Max nTPM: 286.9
Min nTPM: 94.6
RHH5308_R3675
169.3
RHH5216_R3588
286.9
RHH5245_R3617
94.6
RHH5274_R3646
164.7
Non-switched memory B-cell nTPM: 211.6
Samples: 4
Max nTPM: 239.8
Min nTPM: 165.7
RHH5309_R3676
229.1
RHH5217_R3589
211.7
RHH5246_R3618
239.8
RHH5275_R3647
165.7
Plasmablast nTPM: 233.6
Samples: 4
Max nTPM: 292.5
Min nTPM: 173.0
RHH5312_R3679
202.6
RHH5220_R3592
292.5
RHH5249_R3621
266.3
RHH5278_R3650
173.0
Switched memory B-cell nTPM: 214.9
Samples: 4
Max nTPM: 264.2
Min nTPM: 132.0
RHH5311_R3678
244.6
RHH5219_R3591
264.2
RHH5248_R3620
218.9
RHH5277_R3649
132.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
63.4
Schmiedel sample id
TPM
Naive B-cell TPM: 63.4
Samples: 91
Max TPM: 91.2
Min TPM: 33.5
B_CELL_NAIVE_1
91.2
B_CELL_NAIVE_2
80.3
B_CELL_NAIVE_3
79.4
B_CELL_NAIVE_4
79.1
B_CELL_NAIVE_5
78.7
B_CELL_NAIVE_6
78.6
B_CELL_NAIVE_7
78.4
B_CELL_NAIVE_8
78.2
B_CELL_NAIVE_9
77.6
B_CELL_NAIVE_10
77.0
B_CELL_NAIVE_11
76.4
B_CELL_NAIVE_12
76.4
B_CELL_NAIVE_13
76.3
B_CELL_NAIVE_14
76.1
B_CELL_NAIVE_15
75.6
B_CELL_NAIVE_16
75.5
B_CELL_NAIVE_17
73.8
B_CELL_NAIVE_18
73.1
B_CELL_NAIVE_19
72.9
B_CELL_NAIVE_20
72.8
B_CELL_NAIVE_21
72.7
B_CELL_NAIVE_22
72.4
B_CELL_NAIVE_23
71.5
B_CELL_NAIVE_24
70.7
B_CELL_NAIVE_25
70.0
B_CELL_NAIVE_26
69.9
B_CELL_NAIVE_27
69.6
B_CELL_NAIVE_28
69.3
B_CELL_NAIVE_29
69.3
B_CELL_NAIVE_30
69.1
B_CELL_NAIVE_31
68.8
B_CELL_NAIVE_32
68.7
B_CELL_NAIVE_33
68.5
B_CELL_NAIVE_34
68.5
B_CELL_NAIVE_35
67.9
B_CELL_NAIVE_36
67.7
B_CELL_NAIVE_37
67.7
B_CELL_NAIVE_38
67.5
B_CELL_NAIVE_39
66.6
B_CELL_NAIVE_40
66.2
B_CELL_NAIVE_41
66.0
B_CELL_NAIVE_42
66.0
B_CELL_NAIVE_43
65.8
B_CELL_NAIVE_44
65.5
B_CELL_NAIVE_45
65.4
B_CELL_NAIVE_46
64.9
B_CELL_NAIVE_47
64.8
B_CELL_NAIVE_48
64.7
B_CELL_NAIVE_49
64.6
B_CELL_NAIVE_50
64.5
B_CELL_NAIVE_51
63.9
B_CELL_NAIVE_52
63.7
B_CELL_NAIVE_53
63.6
B_CELL_NAIVE_54
63.5
B_CELL_NAIVE_55
63.2
B_CELL_NAIVE_56
63.0
B_CELL_NAIVE_57
62.5
B_CELL_NAIVE_58
61.9
B_CELL_NAIVE_59
61.7
B_CELL_NAIVE_60
60.8
B_CELL_NAIVE_61
59.4
B_CELL_NAIVE_62
58.7
B_CELL_NAIVE_63
58.6
B_CELL_NAIVE_64
57.6
B_CELL_NAIVE_65
57.3
B_CELL_NAIVE_66
57.2
B_CELL_NAIVE_67
56.9
B_CELL_NAIVE_68
56.8
B_CELL_NAIVE_69
55.9
B_CELL_NAIVE_70
55.8
B_CELL_NAIVE_71
55.2
B_CELL_NAIVE_72
54.0
B_CELL_NAIVE_73
53.9
B_CELL_NAIVE_74
53.4
B_CELL_NAIVE_75
52.6
B_CELL_NAIVE_76
51.0
B_CELL_NAIVE_77
51.0
B_CELL_NAIVE_78
49.7
B_CELL_NAIVE_79
49.3
B_CELL_NAIVE_80
46.7
B_CELL_NAIVE_81
46.4
B_CELL_NAIVE_82
45.5
B_CELL_NAIVE_83
44.8
B_CELL_NAIVE_84
44.7
B_CELL_NAIVE_85
44.4
B_CELL_NAIVE_86
43.2
B_CELL_NAIVE_87
42.9
B_CELL_NAIVE_88
41.3
B_CELL_NAIVE_89
40.0
B_CELL_NAIVE_90
37.6
B_CELL_NAIVE_91
33.5
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