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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

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  • MLF2
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:98.0 nTPM
Monaco:233.6 nTPM
Schmiedel:63.4 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

98.0
HPA sample nTPM
Memory B-cell
nTPM: 85.9
Samples: 6

Max nTPM: 122.5
Min nTPM: 19.4
P10809_1017 87.6
P10809_1025 83.8
P10809_1044 19.4
P10809_1063 105.4
P10809_1092 96.5
P10809_1105 122.5
Naive B-cell
nTPM: 98.0
Samples: 6

Max nTPM: 130.9
Min nTPM: 78.7
P10809_1011 78.7
P10809_1029 79.3
P10809_1048 104.9
P10809_1067 97.4
P10809_1091 96.9
P10809_1104 130.9

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

233.6
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 191.5
Samples: 4

Max nTPM: 257.0
Min nTPM: 108.2
RHH5310_R3677 257.0
RHH5218_R3590 208.0
RHH5247_R3619 192.7
RHH5276_R3648 108.2
Naive B-cell
nTPM: 178.9
Samples: 4

Max nTPM: 286.9
Min nTPM: 94.6
RHH5308_R3675 169.3
RHH5216_R3588 286.9
RHH5245_R3617 94.6
RHH5274_R3646 164.7
Non-switched memory B-cell
nTPM: 211.6
Samples: 4

Max nTPM: 239.8
Min nTPM: 165.7
RHH5309_R3676 229.1
RHH5217_R3589 211.7
RHH5246_R3618 239.8
RHH5275_R3647 165.7
Plasmablast
nTPM: 233.6
Samples: 4

Max nTPM: 292.5
Min nTPM: 173.0
RHH5312_R3679 202.6
RHH5220_R3592 292.5
RHH5249_R3621 266.3
RHH5278_R3650 173.0
Switched memory B-cell
nTPM: 214.9
Samples: 4

Max nTPM: 264.2
Min nTPM: 132.0
RHH5311_R3678 244.6
RHH5219_R3591 264.2
RHH5248_R3620 218.9
RHH5277_R3649 132.0

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

63.4
Schmiedel sample id TPM
Naive B-cell
TPM: 63.4
Samples: 91

Max TPM: 91.2
Min TPM: 33.5
B_CELL_NAIVE_1 91.2
B_CELL_NAIVE_2 80.3
B_CELL_NAIVE_3 79.4
B_CELL_NAIVE_4 79.1
B_CELL_NAIVE_5 78.7
B_CELL_NAIVE_6 78.6
B_CELL_NAIVE_7 78.4
B_CELL_NAIVE_8 78.2
B_CELL_NAIVE_9 77.6
B_CELL_NAIVE_10 77.0
B_CELL_NAIVE_11 76.4
B_CELL_NAIVE_12 76.4
B_CELL_NAIVE_13 76.3
B_CELL_NAIVE_14 76.1
B_CELL_NAIVE_15 75.6
B_CELL_NAIVE_16 75.5
B_CELL_NAIVE_17 73.8
B_CELL_NAIVE_18 73.1
B_CELL_NAIVE_19 72.9
B_CELL_NAIVE_20 72.8
B_CELL_NAIVE_21 72.7
B_CELL_NAIVE_22 72.4
B_CELL_NAIVE_23 71.5
B_CELL_NAIVE_24 70.7
B_CELL_NAIVE_25 70.0
B_CELL_NAIVE_26 69.9
B_CELL_NAIVE_27 69.6
B_CELL_NAIVE_28 69.3
B_CELL_NAIVE_29 69.3
B_CELL_NAIVE_30 69.1
B_CELL_NAIVE_31 68.8
B_CELL_NAIVE_32 68.7
B_CELL_NAIVE_33 68.5
B_CELL_NAIVE_34 68.5
B_CELL_NAIVE_35 67.9
B_CELL_NAIVE_36 67.7
B_CELL_NAIVE_37 67.7
B_CELL_NAIVE_38 67.5
B_CELL_NAIVE_39 66.6
B_CELL_NAIVE_40 66.2
B_CELL_NAIVE_41 66.0
B_CELL_NAIVE_42 66.0
B_CELL_NAIVE_43 65.8
B_CELL_NAIVE_44 65.5
B_CELL_NAIVE_45 65.4
B_CELL_NAIVE_46 64.9
B_CELL_NAIVE_47 64.8
B_CELL_NAIVE_48 64.7
B_CELL_NAIVE_49 64.6
B_CELL_NAIVE_50 64.5
B_CELL_NAIVE_51 63.9
B_CELL_NAIVE_52 63.7
B_CELL_NAIVE_53 63.6
B_CELL_NAIVE_54 63.5
B_CELL_NAIVE_55 63.2
B_CELL_NAIVE_56 63.0
B_CELL_NAIVE_57 62.5
B_CELL_NAIVE_58 61.9
B_CELL_NAIVE_59 61.7
B_CELL_NAIVE_60 60.8
B_CELL_NAIVE_61 59.4
B_CELL_NAIVE_62 58.7
B_CELL_NAIVE_63 58.6
B_CELL_NAIVE_64 57.6
B_CELL_NAIVE_65 57.3
B_CELL_NAIVE_66 57.2
B_CELL_NAIVE_67 56.9
B_CELL_NAIVE_68 56.8
B_CELL_NAIVE_69 55.9
B_CELL_NAIVE_70 55.8
B_CELL_NAIVE_71 55.2
B_CELL_NAIVE_72 54.0
B_CELL_NAIVE_73 53.9
B_CELL_NAIVE_74 53.4
B_CELL_NAIVE_75 52.6
B_CELL_NAIVE_76 51.0
B_CELL_NAIVE_77 51.0
B_CELL_NAIVE_78 49.7
B_CELL_NAIVE_79 49.3
B_CELL_NAIVE_80 46.7
B_CELL_NAIVE_81 46.4
B_CELL_NAIVE_82 45.5
B_CELL_NAIVE_83 44.8
B_CELL_NAIVE_84 44.7
B_CELL_NAIVE_85 44.4
B_CELL_NAIVE_86 43.2
B_CELL_NAIVE_87 42.9
B_CELL_NAIVE_88 41.3
B_CELL_NAIVE_89 40.0
B_CELL_NAIVE_90 37.6
B_CELL_NAIVE_91 33.5
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